 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033996 Open in IMG/M |
| Scaffold ID | Ga0334979_0001853 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15525 |
| Total Scaffold Genes | 33 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (81.82%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004231 | Metagenome | 447 | Y |
| F014489 | Metagenome | 262 | N |
| F015570 | Metagenome | 253 | Y |
| F020664 | Metagenome | 222 | Y |
| F024504 | Metagenome | 205 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334979_0001853_11195_11569 | F014489 | AGGAG | MEMKQQHYAILKRLHHGASSLKRFTDKDGEVGNQGFHYLRYLNDLQNFGYALEIDETWHITGFGVAKLAEQTPRVNKDRVAAGTITEIYDGADLKNGGNRVGASDFLKYPSKFGDNLVLPRVSL |
| Ga0334979_0001853_11691_11975 | F004231 | AGGAG | MMGVTPKDFQHEICVYLEGIGECLVCFDILSPGDELDADHSDDYEIDFSVFDEDDKHITYDISKKQYNHCENKAMDEMRDITTQWHKEWETCFD |
| Ga0334979_0001853_12159_12455 | F015570 | GAG | MNDKLDQAFDLLEFDVTDQIRNMAYLAEQRKVATGVTDGTVQRALVRDLTENLRTLPNNIDPLLLRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS |
| Ga0334979_0001853_12477_12623 | F024504 | AGGAG | MMDRPTVGITAPYRKSDYTYQDMLLDRIKDLEALVAKLEQRIKVLEAK |
| Ga0334979_0001853_7983_8198 | F020664 | GGCGG | MEKPEIKHNLIRFSEREREIMRTIGGGNLSEGARICVMWGAHFWNLGLNTEMDLNHIGLVTVSSTDKHPNE |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |