Scaffold Ga0334979_0000761

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000761
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24291
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009529	Metagenome / Metatranscriptome	316	Y
F020909	Metagenome	221	Y
F024097	Metagenome / Metatranscriptome	207	N
F025466	Metagenome / Metatranscriptome	201	Y
F058137	Metagenome	135	Y
F096878	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000761_10820_11017	F025466	AGGAG	MFDAVKIQAIVMTYLRAGAAAVLALYLANPNQPLKNYLFAGVAAVAGPVMKALDPKATEFGKGSK
Ga0334979_0000761_14283_14414	F058137	N/A	MVGKKVRSVRVSDQLWARAMAKAKSEGKSVSEVIVDFLKEYIK
Ga0334979_0000761_14415_14579	F020909	AGG	MITKRGKQVRAIGIVFLVYVLFHISANLWWVGIDSPNAEFLGWCWGSMSECVVL
Ga0334979_0000761_15046_15405	F096878	GAG	VGLLINRDPLFSVHNSLNGDVAIYLEERDAALDLVEDVLAAVPMADLEAIENLMITDLKSSDAARMMDKARSAVPDLAIKLASISESEALTLAEQLITAVKYARAMRSQPLTTKLELVK
Ga0334979_0000761_15407_15757	F024097	GGAG	LANPNGRKGALFETSVMKWLRDRGVSAERLTKAGSKDEGDIVCVVANKTYIFELKNRKAITLPAFWDEAITEAKNYAVARGLKQTPPAYVIIKRRNAGIEKSWVVQDLEQWLGTRD
Ga0334979_0000761_22545_23285	F009529	AGGAG	MNCTICDKATKNEGACLTCELKVKACLVELPALQYEAGNHLAPARTGSGAVSSERSIGINVNALDFSMATDLLHILHGYEVPIRIGRGLTPPAYIDKEPSIEAEVDATCSFHLAHLDYTLLQPWAVDFASDVYGLHAKGRAAAKKFSEQARRIPCPTDDCKRFVVIDVENLSDEVSCFGCKQSWTVARLVKLAMSNPNRKFFLDVEAISLWLKISQREIYRIVKRNDIEKRGSLYNFGDILKVVQI