Scaffold Ga0334979_0000683

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000683
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25585
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (70.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F002245	Metagenome / Metatranscriptome	578	Y
F006846	Metagenome / Metatranscriptome	363	Y
F050154	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000683_11080_11361	F006846	AGGA	MLIEFVERYLMRPKRLREAIEAVVHENDELLRMLKQYEENDTPTNLTWSEGDMWYGWTYNSNAKRYYFDDIGNESLMGLWEDQWAREKEAEAK
Ga0334979_0000683_15581_15829	F000263	N/A	MVNADVPGIDIMHGELKNLMLIAEQELSDAIEQEERSEEAMDSMVRTECEGRLDTLTELYKLTYDLSFAIGIRTENRKDGHI
Ga0334979_0000683_15871_16026	F050154	GAG	MKIHLISLNQDLDKDLNVQSKINIQGQIMATEHLLSVATDIMNDNLQGKGY
Ga0334979_0000683_21983_22195	F002245	N/A	MKVPHTVVFEAIIDLDKIPASLLPALIALDKSSIEQMCKEATLHALGMSNVLPLANDNNTWAEVTIKGDN