Scaffold Ga0334979_0000312

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000312
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37885
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (89.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009516	Metagenome	316	Y
F014495	Metagenome / Metatranscriptome	262	Y
F025684	Metagenome	200	Y
F056413	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000312_30744_30896	F056413	GGA	MDAELMSYYEHGLRPAYMAEQMGLTIASVEGRYHKLKRAAKADNKKPPAE
Ga0334979_0000312_30940_31137	F025684	AGGAG	MTDYDDEDDELALPERYIERASETLAYRLMEYLEMLGVIGKDHVSYLRYPPIELIEDAEKALKDE
Ga0334979_0000312_31794_31967	F009516	N/A	MTYPIGTLEVGENATMPATKKGDAKRTSRNVSQYGIRNGKCFKCRTVGGVTFITRWM
Ga0334979_0000312_31964_32113	F014495	AGGA	MIKPQQAAPMGRKHRVSSDSAWPLRGLDGKTFAERRAMREKEQSKCLDQ