Scaffold Ga0335003_0050824

Overview

Basic Information

• Taxon OID: 3300033995
• Scaffold ID: Ga0335003_0050824
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2225
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008073	Metagenome	339	Y
F044503	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335003_0050824_1680_1829	F044503	GGA	MRGRNLTEYDKELIFEAWQERKQIKVIAQEMGRSYACIYFHLKRRCLVG
Ga0335003_0050824_186_782	F008073	N/A	MEFVCGLKQFKEYKKEEATELLDCLSKLFSSYGWITEDRVNYILHAGMRGQYGDFYHVNEKTVSVWINQYYAHHQSQIVQEIQALNNQEKQYSDEEIEHWKEIGRQTFRDNYQNAKETGHCKHIADWGIYWFNRLQEKGILKPWEFNVEEIESDVRRELRLTTRYVEESTVGAKTKNKIWKLFILQAIKDNKNLDQLI