Scaffold Ga0334996_0037869

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0037869
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3052
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017469	Metagenome / Metatranscriptome	240	Y
F027758	Metagenome	193	Y
F034906	Metagenome	173	Y
F036551	Metagenome	169	Y
F072283	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0037869_1012_1218	F036551	GAGG	MNETLETLLSNEIRICELCGSNEWRILHAGDESNCECEGECLRVCDSTLLSDDGCDGVAILMNKGERV
Ga0334996_0037869_1620_1760	F072283	N/A	MQDLIDLIKPILPNALVIDTDEGILIETGLELGLGGLLQTIEGEEA
Ga0334996_0037869_2379_2537	F027758	AGG	MLIDFFLISFWVFGFFFLAGGIAWLADQVASFHLEGMARVRRLQEKEREGGR
Ga0334996_0037869_31_258	F034906	N/A	MELMKNKQRVKSAADQAVRQRNYQRARQRAFTRLANTYPDTYRLYLEEEKIADVKMGKKWLDIDGNTSLINSGTR
Ga0334996_0037869_881_1015	F017469	AGGAG	MKSICKFCGWEITKPEWYNEYQGSYACDDCMMDQAIEREKENSI