NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0031152

Scaffold Ga0334996_0031152


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0031152 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3407
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009503Metagenome / Metatranscriptome317Y
F012452Metagenome280Y
F047671Metagenome / Metatranscriptome149Y
F058101Metagenome / Metatranscriptome135Y
F105039Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0031152_1047_1208F009503GAGGMEQLQFECRICKKVTRQLVHKITDNLPQGVEVIQCTKCEVMGVAQIGGTDADL
Ga0334996_0031152_1189_1677F105039GGTGGLKIKLTANEMCVCMVAAVKITSDKGDLLESRGHYNDTPFMTYLAELAESIGSEWAVAKYFGLPFDPFEDKGKRKADVGAGIEVRWTKYELGQLIVYEYDRPNDIAVLVTGTAPNYYIAGWIPVTMAQKPRYRHSKQPTWWVTQINLQPIENLRKSNYGTTAI
Ga0334996_0031152_1861_2532F012452AGGTGGMAFLDNYEGNKERTDRWNLTYPEGRLQAHIVEFNAEKGYILVQAKAWRNQTEIEPAGIDYAYGFIAAYNPNMKRWFVEDTTTSALMRVMALVMGGTEKATRETMEQVEKLSTKVATADVKADYDYWTTKHGDVPSYATAAEAEQSGIPSLGSSIDEIANQLGGQLVEEKPRCEHGTRVWKTGESAKTGKAWGGYFCTEKAKANQCEPVWYQLGSTGQWVIRLG
Ga0334996_0031152_3251_3391F047671N/AMAAALALYMAGVTDPKTLAMAGVAAVAPVILRWLNPQDKSFGNLGK
Ga0334996_0031152_720_902F058101GGAMTINPKDIYKATDGKIYSFSGFGGVMNCTSCDNDTMVNEYDREDGLVVWFCKRCEDKLKL
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