Scaffold Ga0334996_0007796

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0007796
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7202
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002502	Metagenome / Metatranscriptome	553	Y
F043404	Metagenome	156	Y
F047680	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0007796_1646_1813	F043404	AGGA	MIDTKDPLLMELADHFVELHNVGGIELEQWETAHQFVKNFYHTEEYAEIRIRGKK
Ga0334996_0007796_2729_2875	F002502	AGAAGG	MTTLTVGSQFTTAKSKVSGIIKEIVKNKNGSARVRLDVNGQDRWTTVK
Ga0334996_0007796_6382_6522	F047680	AGCAGG	MKSVEQVLIEWYPNGVYNEEQLWEAIAEANGMDYSEIADGDLAEWI