NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0007644

Scaffold Ga0334996_0007644


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0007644 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7273
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F005705Metagenome / Metatranscriptome392Y
F008493Metagenome / Metatranscriptome332Y
F099157Metagenome / Metatranscriptome103Y
F099293Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0007644_293_436F005705AGGAGMKITIKVKPKHRKHIVLFCAGTPFKQKVVESKIKYKRNPKHKGQHND
Ga0334996_0007644_4122_4334F000652AGGAGMKAMVTTVLRQEIEVPEGTDRQSVLEFLAENQSFSGAFIGVSDMTQRFRILDISVVEETITELGEESYDA
Ga0334996_0007644_4617_4994F099157AGGMRYYDTLATYERNGFTVIVDKTWEDIAVRDCFDDSCYDIADMERKVNSGDLDWFMLRVRVMLDGYEMGSACLGGCMYEDAKEVLTDGTAEDMIWEAMVEAKEAVWPLMRKLQAINEELEREGINV
Ga0334996_0007644_6187_6462F008493N/AMTSERGDSYIGLTRKSLPNADKVVAERWRKHKSRAVNENRLWALYVYLKTGGLAMNWTHEIIAIVRGRKEAYAYERELVKLFEPELNDQYL
Ga0334996_0007644_6598_6738F099293AGGAGMSDYKQRLDSIMLQLQTIIDEEYEDNANIQDAFNALACALDEEIIS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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