Scaffold Ga0334996_0002858

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0002858
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11842
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (16.13%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010397	Metagenome / Metatranscriptome	304	Y
F019824	Metagenome / Metatranscriptome	227	Y
F045085	Metagenome / Metatranscriptome	153	Y
F091907	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0002858_103_288	F010397	AGGAG	MNVNEFERLKPVVTMQKINELIKLIDEERVKTEILYRDRVRSLDDISILLKEAKKSFVKG
Ga0334996_0002858_2688_2966	F091907	N/A	MNMNKNKTGRKATAVNEITDRNFTIVDLININSSVKAPTIRMHVKRSVASGRYKISGSQKTGKRGKPSIVYTYESIATATVSATETAVASSN
Ga0334996_0002858_3683_4015	F019824	N/A	MDKYITDNFTGSIDDLLNHCSNLDVDKVEQQVKVEEKEACIQVIMKELECNEFEAEVIYNELVLSEVKETVDKMVEDGLLYVSGHNEDGEPLFQLTELGKAVRNELGDGK
Ga0334996_0002858_551_715	F045085	N/A	MNILYKLINLTIGLIFGSIFAIGLLLILSIFFVVLIPFIFYFTVREVLKQLTKR