Scaffold Ga0334996_0001568

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0001568
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15455
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F003134	Metagenome / Metatranscriptome	505	Y
F009503	Metagenome / Metatranscriptome	317	Y
F012452	Metagenome	280	Y
F025683	Metagenome / Metatranscriptome	200	Y
F090378	Metagenome / Metatranscriptome	108	Y
F105039	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0001568_4762_4923	F009503	GAGG	MEQVQFECRICKKVTRQLVHKITDNLPHGVEVIQCTKCEVMGVAQIGGTDADV
Ga0334996_0001568_4904_5353	F105039	N/A	MVAAVKITSDKGQLLDLPRSYNNSSFMIYLSELAESIGSEWAVAKYFGLPFDPFEDKGKRKADVGAGIEVRWTKYELGQLIVYEYDRPTDIAVLVTGEAPNYYIAGWIPVTMAQKPRYRHTKQPTWWVTQINLQPIENLRKSNYGTSAI
Ga0334996_0001568_5389_5601	F000403	AGG	VGRAFAMSDYMEMIDVKTMTCKLLCNGEVIAEYKVEQCDKCSQITKLDSFGYQKGYDKHEKVIWFCGGCR
Ga0334996_0001568_5580_6251	F012452	AGGTGG	MAFLDNYEGNKERTDRWNLTYPEGRLQAHIVEFNADKGYILVQAKAWRNQTEIEPAGIDYAYGFIAAYNPNMKRWFVEDTTTSALMRVMALVMGGTEKATRETMEQVEKLSTKVATADVKADYDYWTTKHGDVPSYATAAEAEQSGIPSLGSSIDEIANQLGGQLIEEKPRCEHGTRVWKTGESAKTGKAWGGYFCTEKAKANQCEPVWYQLGSTGQWVVRLP
Ga0334996_0001568_6251_6424	F025683	GGAG	MVLDLLDPETLGRLVGVIFLMVLGGAAGYAKGFKEGKREGMARRKAISRHMSNKVVD
Ga0334996_0001568_7983_8114	F090378	GGCGG	MVLRYADTRTITFGAGLTGTESSASGGYKRATITAGTGNVSWA
Ga0334996_0001568_9426_10682	F003134	GGTGG	MTQWSPVWKVLLDGVEYTDAVLANLTIRSGRTNIYEQAQAGYVNLQLLDVNQVAVPVNINSTISVQVQDTTGTYVPIFGGNVVDIALEVRDIGTTMFTQTYSITALGALARLPKVIYTDALARDFDGDQIYEILSGVLYNTWAQVAPSVTWAGYTPAGTTWATAENNGLGEIDRPGNYDLAARGSGQDPIDVYSLVSALATSGLGYIYEDAQGRIGYADSTHRTNYLAANGYVDLDANHARAAGLRIETRVGDVRNAITIKYGTTSQNDVSDSDPASIALYGNLAQIITTTLHDAADANAQAAFYLSLRAQPQPIFSEISFDLTNPEIDNSDRNNLINVFMGEAIALNNLPLNMSSGTFQGFVEGWSFQASYNRLSVTLLLSPLAYSLQAMRWNDVPITETWASVSPTLDWANATIVA