Scaffold Ga0334996_0000003

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0000003
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 172253
• Total Scaffold Genes: 236
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 126 (53.39%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004208	Metagenome / Metatranscriptome	448	Y
F024768	Metagenome / Metatranscriptome	204	Y
F034149	Metagenome / Metatranscriptome	175	Y
F038911	Metagenome / Metatranscriptome	165	Y
F055721	Metagenome / Metatranscriptome	138	Y
F080645	Metagenome / Metatranscriptome	115	Y
F101046	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0000003_100605_101195	F034149	GGA	MTLSQGLVDQENEEAGFEIIHLSFRKRLSESMYGGPVNYYIGNIVFRLTDPDAINRMKYYMEENEELRVAPDLELMEKYYEGLHFVFEKPEHAILTDDIPEEERYVPLDIRNKHGIKDEDVFIHAHRRNTAPLHDFIQYNEKFNCYRMHEYFQDTPVVRGIIQYLQDMKDGKPNPSRTVYHEQFINTLENLCWWWD
Ga0334996_0000003_15703_15981	F080645	N/A	MDITTQQVSELLQAHCYRVIDNMSSDDLFSYAMQMMIQSFDQNPGQGDTDVDMLIEDIWVAEGEDEDSVQEFIAGVFGDALLAEEIVKSTQF
Ga0334996_0000003_166143_166328	F038911	GAGG	MVEKVKFVTVTRVIDDRAGIHYLDAVDVNGYHWSAEMDSKQEKWLVYNKVWTRDPQQPYD
Ga0334996_0000003_168250_168546	F004208	GAGG	MTYKLNEEANAFSYTREELFECITRIVAHPHKTITEHDQSRALAIMVVFDDYFTNYTQSDNNGGHCVYECDAMDFTDFVRFKLCIDDYDAVDVNEVLK
Ga0334996_0000003_169369_169671	F101046	GGAG	MQLSYGNDLLLEAAELRAIIKGELGFRKCPDCQGDGESWTLHYVLKDDPDQSNEQFKEVSAQYAADFDEDNLPPEYSWGECHLYECDTCHSVGYIPVEQW
Ga0334996_0000003_169665_169946	F024768	GGA	MVMNYETEIIDGRRVVVRHFFKAHEIQVGSRWARADGSKGFVTVEGFNTYGATDPWIEVVYSWELNGEKFIHEKDAFAFQCRYCLIVEETNEI
Ga0334996_0000003_171916_172164	F055721	N/A	MNKEEYYKYIEENDTYPEHSHKWIVRTYTDAGIHNPNEVFYRNFGPFNTKDEAVLFIGGYKMKYTTQGFITRWTVQALCEVL