Scaffold Ga0334994_0025560

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0025560
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3875
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009503	Metagenome / Metatranscriptome	317	Y
F024931	Metagenome	204	N
F047671	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0025560_1516_1677	F009503	AGGA	MDKVQFECRKCKKITVQLIHKITDNLPEGVEVIQCTKCEIMGVAQIGTSNANL
Ga0334994_0025560_1658_2143	F024931	AGG	MQLTREEEITCMLAAVKLAVDNNKLMDNPQRHQKELGTFEYLVESAEAIGSEWVVAKYFNLPFDPYENKFKVKADVGNAIEVRWTKYVTGQLIVHEYDRPTDIAVLVTGQSPHYFIAGWIPIAMAQRPKYRHSKQPNWWVTQINLQPIENLRKSNYGQSAI
Ga0334994_0025560_3741_3875	F047671	N/A	AALALYMAGVTDPKTLAMAGVAAVAPVILRWLNPNDKAFGSTGK