NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334994_0025560

Scaffold Ga0334994_0025560


Overview

Basic Information
Taxon OID3300033993 Open in IMG/M
Scaffold IDGa0334994_0025560 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3875
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009503Metagenome / Metatranscriptome317Y
F024931Metagenome204N
F047671Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0334994_0025560_1516_1677F009503AGGAMDKVQFECRKCKKITVQLIHKITDNLPEGVEVIQCTKCEIMGVAQIGTSNANL
Ga0334994_0025560_1658_2143F024931AGGMQLTREEEITCMLAAVKLAVDNNKLMDNPQRHQKELGTFEYLVESAEAIGSEWVVAKYFNLPFDPYENKFKVKADVGNAIEVRWTKYVTGQLIVHEYDRPTDIAVLVTGQSPHYFIAGWIPIAMAQRPKYRHSKQPNWWVTQINLQPIENLRKSNYGQSAI
Ga0334994_0025560_3741_3875F047671N/AAALALYMAGVTDPKTLAMAGVAAVAPVILRWLNPNDKAFGSTGK

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