Scaffold Ga0334994_0003436

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0003436
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11354
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (37.04%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039112	Metagenome	164	Y
F082108	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0003436_236_376	F039112	N/A	MTLSFSSDVYTEMVQVQQAQIQALQNKVQELEARIEVLQQQSILFI
Ga0334994_0003436_8510_8950	F082108	N/A	MIDANCDFKGATGASITHYSTRTGDMGNPLRNEFLDLYADSFTKEDWVYYLDDDNILHPKFLEEWNNLNSLDCSIVTWGQGGRLRPTDQPQVGNIDTACYMFKPYDLPNLRFEMTYEADGIFASEAARLGTLICVEQYLCYYNALK