Scaffold Ga0334994_0002899

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0002899
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12411
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020323	Metagenome	224	Y
F038150	Metagenome	166	Y
F042221	Metagenome	158	Y
F056421	Metagenome	137	Y
F057202	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0002899_5890_6144	F038150	GGA	MTDDDFRRLESKVDKLTDAVGKLILFEERQANQGARIGAVEAQLSVHDDGLHRVDRKIDQWVNRGMGVWAAAAVVFALVQFWKK
Ga0334994_0002899_7238_7480	F042221	N/A	MITEDDEFERIEREIKWRLDSTRSTVVADDYYWIPIDQDTPTSMKILLLGRSGVATMGHYEHTPGTQFWQFWAPLPRKRP
Ga0334994_0002899_8350_8469	F056421	GGA	MNDDEVEGLFAWGWLDLALAVILTLLAIAALFFAAGYLT
Ga0334994_0002899_8818_9015	F057202	AGAAGG	MTITQQFKRITRRLTPVEMAATELAEAELHRLEAHSAVEFATSMVAYEDARIKRLRKFLTDAEKV
Ga0334994_0002899_9166_9336	F020323	GGAGG	VNRLTQLKARLKAAQAELLIRTRTHNSASRAYNKVVAHIAELEKRIDNLAKISSGS