Scaffold Ga0334992_0056786

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0056786
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2206
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000141	Metagenome / Metatranscriptome	1941	Y
F078701	Metagenome	116	Y
F083918	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0056786_1543_1863	F000141	GAG	MTTDFYMMVSIWYVLNAIAGNKDITIMHPRFKCNGCKRDTEFLWLNEIDTPEGFKAYQCMDCGCVGVKNVVEALHVPDSDICRCDKCGGWKFEAVVCHTCQLIGAK
Ga0334992_0056786_1799_1963	F083918	GGGGG	MGYLEIVDGSGYQARFENDKITIEPTTDKCMSCNDDRLLHDGKYLVCTQCHCRQ
Ga0334992_0056786_1963_2205	F078701	N/A	SFAEDKKEPTVWSVGDVVEAIPMPPKAQECKHGMMILKEGIAKTGKSYYGYVCSAAKPDQCDARWHKLTAAGSWFWDGGE