Basic Information | |
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Taxon OID | 3300033992 Open in IMG/M |
Scaffold ID | Ga0334992_0005211 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9317 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (96.30%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F019438 | Metagenome | 229 | Y |
F035733 | Metagenome | 171 | Y |
F042903 | Metagenome | 157 | Y |
F096622 | Metagenome | 104 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334992_0005211_3073_3303 | F042903 | AGGAG | MAKLPYTYTICPDQEPPKQFTASCVDMGRLLKNSPDGDLTINQKRTATWDVWSGNHMGAIEEALHAISEQHKKEKK |
Ga0334992_0005211_3331_3453 | F019438 | GGAGG | MDTVLATILLGFIGVVVAGLVLVALMRLWFWMDEQERNDR |
Ga0334992_0005211_345_590 | F096622 | GGAG | MSKWESHKDRGNTTFNRWAEANSVAKMTRENNTWMHSRGKLCWTCQKQSVPEKGCVLNINMGLHKYVCKPCVDARKPKEAT |
Ga0334992_0005211_8232_8459 | F035733 | AGGAG | MREPQQHFYASSVSQWATTNDKRDLRQLLRLMDEDGYPYNLFLVPLDHTATYEIRMYQPQVEGTQWLGFFNPKEK |
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