NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0005211

Scaffold Ga0334992_0005211


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0005211 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9317
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (96.30%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019438Metagenome229Y
F035733Metagenome171Y
F042903Metagenome157Y
F096622Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0005211_3073_3303F042903AGGAGMAKLPYTYTICPDQEPPKQFTASCVDMGRLLKNSPDGDLTINQKRTATWDVWSGNHMGAIEEALHAISEQHKKEKK
Ga0334992_0005211_3331_3453F019438GGAGGMDTVLATILLGFIGVVVAGLVLVALMRLWFWMDEQERNDR
Ga0334992_0005211_345_590F096622GGAGMSKWESHKDRGNTTFNRWAEANSVAKMTRENNTWMHSRGKLCWTCQKQSVPEKGCVLNINMGLHKYVCKPCVDARKPKEAT
Ga0334992_0005211_8232_8459F035733AGGAGMREPQQHFYASSVSQWATTNDKRDLRQLLRLMDEDGYPYNLFLVPLDHTATYEIRMYQPQVEGTQWLGFFNPKEK

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