Scaffold Ga0334992_0004060

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0004060
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10761
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006985	Metagenome / Metatranscriptome	360	Y
F011142	Metagenome / Metatranscriptome	294	Y
F058788	Metagenome / Metatranscriptome	134	Y
F068428	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0004060_3720_3944	F068428	GGA	MLEDLQIPVRITTCRVRTLRDELSDKDSAILEAAVMNPEWACKTLSNELLKRDIKISDTAIKHHREKRCSCWKI
Ga0334992_0004060_5768_5974	F006985	AGG	MIREVCSCGAEFETDDREAITLVKSWRKTHRHSDRPQMPDAGHGSILTNTDVALGFQAIYDPLEEEID
Ga0334992_0004060_583_891	F011142	AGAAG	MAVVKVAGKVSKVFGASNQGLSLVESYKSATGEDYTRTWSVWFAVSHNLVVDQQVTVFGQLSAKIEDFEDKTGKPGRKVKLDINNAQVDAPKVAEPVASAPF
Ga0334992_0004060_8426_8572	F058788	N/A	MNLLATILQASGIAVISVGVSIIFLPAGLVVAGVGILLFGLALDKGGK