Scaffold Ga0334992_0001335

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0001335
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19561
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (59.38%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009605	Metagenome / Metatranscriptome	315	Y
F015331	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0001335_12549_12668	F009605	AGGA	MKTILNSIWSFLEAFGEARAASILARQGRIEEAKAVYRN
Ga0334992_0001335_18984_19439	F015331	N/A	MNIHADKEYWTGLTWPAAPNQDDYSVFSNYCTGRVLLLGSTKLLLPLCTEAWDVNPVYDDPKIQSRDWFTLDQHWDTVIIDGGLTIFDKETCAQLISKVLPNCDRFIARSFLNPNWPTKYAQYFPRAHELTPVPQEHPINKVYTFYIWNNR