Basic Information | |
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Taxon OID | 3300033992 Open in IMG/M |
Scaffold ID | Ga0334992_0000038 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 121667 |
Total Scaffold Genes | 163 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 96 (58.90%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F011670 | Metagenome / Metatranscriptome | 288 | Y |
F034930 | Metagenome / Metatranscriptome | 173 | Y |
F076008 | Metagenome | 118 | Y |
F087103 | Metagenome / Metatranscriptome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334992_0000038_117248_117454 | F011670 | GGAG | MQISRAEQSVIKYNQEQYRLDQTRLEKQRTEDYAKKIEERRLDQIIAERVARNLRLDLDKGRNIDIEC |
Ga0334992_0000038_117749_117955 | F076008 | GGA | MKFFWGDAKGLKADVERHRAHEAELDAKIAELEGKEDPMSIAALRVYRRFRAQLLQSKADVVTKIGRK |
Ga0334992_0000038_22475_22681 | F034930 | AGGA | MKEFTVKENKAFRLRVQSKKCLTPTDLNHVQFIQECFNKDGEVDFTSNYQFFLTDSEIKSLAKELVND |
Ga0334992_0000038_48960_49112 | F087103 | AGG | MKLLCDDYKEIYVWVDDLNEDLELSPHFDYEEDAVRWRDRMKQELLREKK |
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