NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334992_0000038

Scaffold Ga0334992_0000038


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0000038 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)121667
Total Scaffold Genes163 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)96 (58.90%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011670Metagenome / Metatranscriptome288Y
F034930Metagenome / Metatranscriptome173Y
F076008Metagenome118Y
F087103Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0000038_117248_117454F011670GGAGMQISRAEQSVIKYNQEQYRLDQTRLEKQRTEDYAKKIEERRLDQIIAERVARNLRLDLDKGRNIDIEC
Ga0334992_0000038_117749_117955F076008GGAMKFFWGDAKGLKADVERHRAHEAELDAKIAELEGKEDPMSIAALRVYRRFRAQLLQSKADVVTKIGRK
Ga0334992_0000038_22475_22681F034930AGGAMKEFTVKENKAFRLRVQSKKCLTPTDLNHVQFIQECFNKDGEVDFTSNYQFFLTDSEIKSLAKELVND
Ga0334992_0000038_48960_49112F087103AGGMKLLCDDYKEIYVWVDDLNEDLELSPHFDYEEDAVRWRDRMKQELLREKK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.