Scaffold Ga0334992_0000038

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0000038
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 121667
• Total Scaffold Genes: 163
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 96 (58.90%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011670	Metagenome / Metatranscriptome	288	Y
F034930	Metagenome / Metatranscriptome	173	Y
F076008	Metagenome	118	Y
F087103	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0000038_117248_117454	F011670	GGAG	MQISRAEQSVIKYNQEQYRLDQTRLEKQRTEDYAKKIEERRLDQIIAERVARNLRLDLDKGRNIDIEC
Ga0334992_0000038_117749_117955	F076008	GGA	MKFFWGDAKGLKADVERHRAHEAELDAKIAELEGKEDPMSIAALRVYRRFRAQLLQSKADVVTKIGRK
Ga0334992_0000038_22475_22681	F034930	AGGA	MKEFTVKENKAFRLRVQSKKCLTPTDLNHVQFIQECFNKDGEVDFTSNYQFFLTDSEIKSLAKELVND
Ga0334992_0000038_48960_49112	F087103	AGG	MKLLCDDYKEIYVWVDDLNEDLELSPHFDYEEDAVRWRDRMKQELLREKK