Metagenome / Metatranscriptome Family F087103

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087103
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	49 residues
Representative Sequence	MKLICDDYNQVYVWVDDVDENLELSPHFDYEEDAVAWKERMKQELSK
Number of Associated Samples	82
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	72.38 %
% of genes near scaffold ends (potentially truncated)	9.09 %
% of genes from short scaffolds (< 2000 bps)	56.36 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Duplodnaviria (43.636 % of family members)
NCBI Taxonomy ID	2731341
Taxonomy	All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (10.909 % of family members)
Environment Ontology (ENVO)	Unclassified (32.727 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (44.545 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.33% β-sheet: 16.00% Coil/Unstructured: 62.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF02739	5_3_exonuc_N	3.64
PF00004	AAA	3.64
PF00149	Metallophos	2.73
PF01242	PTPS	2.73
PF05496	RuvB_N	2.73
PF11750	DUF3307	2.73
PF00574	CLP_protease	2.73
PF04321	RmlD_sub_bind	1.82
PF01467	CTP_transf_like	1.82
PF07460	NUMOD3	1.82
PF13186	SPASM	1.82
PF13524	Glyco_trans_1_2	0.91
PF05265	DUF723	0.91
PF08804	gp32	0.91
PF01648	ACPS	0.91
PF01176	eIF-1a	0.91
PF00692	dUTPase	0.91
PF01171	ATP_bind_3	0.91
PF13640	2OG-FeII_Oxy_3	0.91
PF13517	FG-GAP_3	0.91
PF05175	MTS	0.91
PF01165	Ribosomal_S21	0.91
PF04434	SWIM	0.91
PF10902	WYL_2	0.91
PF16363	GDP_Man_Dehyd	0.91
PF07733	DNA_pol3_alpha	0.91
PF00521	DNA_topoisoIV	0.91
PF04055	Radical_SAM	0.91
PF13489	Methyltransf_23	0.91
PF13392	HNH_3	0.91
PF01555	N6_N4_Mtase	0.91
PF00294	PfkB	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	5.45
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	5.45
COG1086	NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC	Cell wall/membrane/envelope biogenesis [M]	3.64
COG0702	Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains	General function prediction only [R]	3.64
COG0451	Nucleoside-diphosphate-sugar epimerase	Cell wall/membrane/envelope biogenesis [M]	3.64
COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	Replication, recombination and repair [L]	3.64
COG2255	Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB	Replication, recombination and repair [L]	2.73
COG0720	6-pyruvoyl-tetrahydropterin synthase	Coenzyme transport and metabolism [H]	2.73
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	2.73
COG1091	dTDP-4-dehydrorhamnose reductase	Cell wall/membrane/envelope biogenesis [M]	1.82
COG1090	NAD dependent epimerase/dehydratase family enzyme	General function prediction only [R]	1.82
COG1089	GDP-D-mannose dehydratase	Cell wall/membrane/envelope biogenesis [M]	1.82
COG1088	dTDP-D-glucose 4,6-dehydratase	Cell wall/membrane/envelope biogenesis [M]	1.82
COG1087	UDP-glucose 4-epimerase	Cell wall/membrane/envelope biogenesis [M]	1.82
COG4279	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	0.91
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.91
COG2176	DNA polymerase III, alpha subunit (gram-positive type)	Replication, recombination and repair [L]	0.91
COG1606	ATP-utilizing enzyme, PP-loop superfamily	General function prediction only [R]	0.91
COG4715	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	0.91
COG5431	Predicted nucleic acid-binding protein, contains SWIM-type Zn-finger domain	General function prediction only [R]	0.91
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	0.91
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.91
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.91
COG0037	tRNA(Ile)-lysidine synthase TilS/MesJ	Translation, ribosomal structure and biogenesis [J]	0.91
COG0756	dUTP pyrophosphatase (dUTPase)	Defense mechanisms [V]	0.91
COG0717	dCTP deaminase	Nucleotide transport and metabolism [F]	0.91
COG0603	7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	0.91
COG0587	DNA polymerase III, alpha subunit	Replication, recombination and repair [L]	0.91
COG0519	GMP synthase, PP-ATPase domain/subunit	Nucleotide transport and metabolism [F]	0.91
COG0482	tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain	Translation, ribosomal structure and biogenesis [J]	0.91
COG0361	Translation initiation factor IF-1	Translation, ribosomal structure and biogenesis [J]	0.91
COG0301	Adenylyl- and sulfurtransferase ThiI (thiamine and tRNA 4-thiouridine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	0.91
COG0188	DNA gyrase/topoisomerase IV, subunit A	Replication, recombination and repair [L]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.27 %
Unclassified	root	N/A	32.73 %

Name	Rank	Taxonomy	Distribution
Viruses	superkingdom	All Organisms → Viruses	58.18 %
Unclassified	root	N/A	32.73 %
cellular organisms	root	All Organisms → cellular organisms	9.09 %

Name	Rank	Taxonomy	Distribution
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	43.64 %
Unclassified	root	N/A	32.73 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.64 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	9.09 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	43.64 %
Unclassified	root	N/A	32.73 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.27 %

Name	Rank	Taxonomy	Distribution
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	43.64 %
Unclassified	root	N/A	32.73 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.64 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.82 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.91 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43.64 %
Unclassified	root	N/A	32.73 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.64 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.91 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %
Epsilonproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	42.73 %
Unclassified	root	N/A	32.73 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.64 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.91 %
Campylobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales	0.91 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	42.73 %
Unclassified	root	N/A	32.73 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.64 %
Helicobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Helicobacteraceae	0.91 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.91 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	42.73 %
Unclassified	root	N/A	32.73 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.64 %
Helicobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Helicobacteraceae → Helicobacter	0.91 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.91 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000558\|Draft_10181741	All Organisms → Viruses → Predicted Viral	3576	Open in IMG/M
3300000558\|Draft_11496186	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	693	Open in IMG/M
3300000558\|Draft_11822170	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	513	Open in IMG/M
3300001580\|Draft_10001866	Not Available	21926	Open in IMG/M
3300001848\|RCM47_1131091	Not Available	731	Open in IMG/M
3300001850\|RCM37_1138526	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	587	Open in IMG/M
3300002161\|JGI24766J26685_10051804	Not Available	921	Open in IMG/M
3300002202\|metazooDRAFT_1230162	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	500	Open in IMG/M
3300002408\|B570J29032_108880009	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	531	Open in IMG/M
3300003277\|JGI25908J49247_10007556	All Organisms → Viruses → Predicted Viral	3435	Open in IMG/M
3300003277\|JGI25908J49247_10032612	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1463	Open in IMG/M
3300003393\|JGI25909J50240_1002943	All Organisms → cellular organisms → Bacteria → Proteobacteria	4346	Open in IMG/M
3300003412\|JGI25912J50252_10013408	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2694	Open in IMG/M
3300003806\|Ga0007864_1001274	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2923	Open in IMG/M
3300004481\|Ga0069718_13471761	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	649	Open in IMG/M
3300004481\|Ga0069718_14703392	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	788	Open in IMG/M
3300005077\|Ga0071116_1004164	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	16858	Open in IMG/M
3300005662\|Ga0078894_10327023	All Organisms → Viruses → Predicted Viral	1389	Open in IMG/M
3300005662\|Ga0078894_11013333	Not Available	714	Open in IMG/M
3300005805\|Ga0079957_1010490	Not Available	6999	Open in IMG/M
3300006029\|Ga0075466_1005770	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4406	Open in IMG/M
3300006030\|Ga0075470_10002328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5912	Open in IMG/M
3300006037\|Ga0075465_10048602	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300006639\|Ga0079301_1151405	All Organisms → cellular organisms → Bacteria → Proteobacteria	685	Open in IMG/M
3300006805\|Ga0075464_10009845	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4680	Open in IMG/M
3300007169\|Ga0102976_1028908	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1660	Open in IMG/M
3300007171\|Ga0102977_1146400	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1471	Open in IMG/M
3300007559\|Ga0102828_1049114	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	978	Open in IMG/M
3300007960\|Ga0099850_1165386	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	884	Open in IMG/M
3300008107\|Ga0114340_1006273	Not Available	6242	Open in IMG/M
3300008110\|Ga0114343_1014446	All Organisms → Viruses → Predicted Viral	3685	Open in IMG/M
3300008113\|Ga0114346_1006019	Not Available	12853	Open in IMG/M
3300009081\|Ga0105098_10013354	All Organisms → Viruses → Predicted Viral	3058	Open in IMG/M
3300009085\|Ga0105103_10049203	All Organisms → Viruses → Predicted Viral	2126	Open in IMG/M
3300009165\|Ga0105102_10271987	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	869	Open in IMG/M
3300009169\|Ga0105097_10208552	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1076	Open in IMG/M
3300009243\|Ga0103860_10060629	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	766	Open in IMG/M
3300009419\|Ga0114982_1000013	Not Available	80174	Open in IMG/M
3300009419\|Ga0114982_1070120	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1092	Open in IMG/M
3300010354\|Ga0129333_10003513	Not Available	14680	Open in IMG/M
3300010354\|Ga0129333_10033450	Not Available	4855	Open in IMG/M
3300010354\|Ga0129333_10034908	Not Available	4747	Open in IMG/M
3300010354\|Ga0129333_10061773	Not Available	3492	Open in IMG/M
3300010354\|Ga0129333_10124016	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2379	Open in IMG/M
3300010354\|Ga0129333_10129002	All Organisms → Viruses → Predicted Viral	2326	Open in IMG/M
3300010354\|Ga0129333_10220172	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1721	Open in IMG/M
3300010354\|Ga0129333_11562071	Not Available	539	Open in IMG/M
3300012006\|Ga0119955_1164186	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Helicobacteraceae → Helicobacter	575	Open in IMG/M
3300012348\|Ga0157140_10000014	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	43729	Open in IMG/M
3300012665\|Ga0157210_1000446	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	17508	Open in IMG/M
3300012665\|Ga0157210_1036069	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	768	Open in IMG/M
3300012665\|Ga0157210_1068141	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	537	Open in IMG/M
3300012933\|Ga0157211_1014863	Not Available	788	Open in IMG/M
3300013004\|Ga0164293_10848974	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	577	Open in IMG/M
3300013005\|Ga0164292_10729903	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	630	Open in IMG/M
3300013285\|Ga0136642_1000905	Not Available	13925	Open in IMG/M
3300013372\|Ga0177922_10157772	Not Available	659	Open in IMG/M
3300017722\|Ga0181347_1198693	Not Available	528	Open in IMG/M
3300017788\|Ga0169931_10095276	All Organisms → Viruses → Predicted Viral	2886	Open in IMG/M
3300020048\|Ga0207193_1726122	Not Available	652	Open in IMG/M
3300020151\|Ga0211736_10909865	Not Available	503	Open in IMG/M
3300020160\|Ga0211733_10257650	All Organisms → Viruses	1076	Open in IMG/M
3300020161\|Ga0211726_10183309	Not Available	1443	Open in IMG/M
3300020172\|Ga0211729_10680746	All Organisms → Viruses → Predicted Viral	1294	Open in IMG/M
3300020222\|Ga0194125_10192808	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1473	Open in IMG/M
3300020527\|Ga0208232_1023564	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	867	Open in IMG/M
3300021963\|Ga0222712_10002918	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	19133	Open in IMG/M
3300021963\|Ga0222712_10004732	Not Available	14102	Open in IMG/M
3300021963\|Ga0222712_10019095	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5778	Open in IMG/M
3300021963\|Ga0222712_10027022	All Organisms → Viruses → Predicted Viral	4621	Open in IMG/M
3300021963\|Ga0222712_10258126	All Organisms → Viruses → Predicted Viral	1111	Open in IMG/M
3300021963\|Ga0222712_10335775	Not Available	936	Open in IMG/M
3300021963\|Ga0222712_10455394	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	766	Open in IMG/M
3300021963\|Ga0222712_10794871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	522	Open in IMG/M
3300022072\|Ga0196889_1037272	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	969	Open in IMG/M
3300022198\|Ga0196905_1117353	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	700	Open in IMG/M
3300022200\|Ga0196901_1244868	Not Available	558	Open in IMG/M
3300022748\|Ga0228702_1135181	Not Available	548	Open in IMG/M
3300024346\|Ga0244775_10764428	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	775	Open in IMG/M
3300025357\|Ga0208383_1003183	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2346	Open in IMG/M
3300025451\|Ga0208426_1027531	All Organisms → cellular organisms → Bacteria → Proteobacteria	860	Open in IMG/M
3300025451\|Ga0208426_1049867	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	645	Open in IMG/M
3300025585\|Ga0208546_1011827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2286	Open in IMG/M
3300025896\|Ga0208916_10007275	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4331	Open in IMG/M
3300027721\|Ga0209492_1091507	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1072	Open in IMG/M
3300027785\|Ga0209246_10000428	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	17955	Open in IMG/M
3300027805\|Ga0209229_10093537	All Organisms → Viruses → Predicted Viral	1353	Open in IMG/M
3300027805\|Ga0209229_10112546	Not Available	1227	Open in IMG/M
3300027805\|Ga0209229_10471304	Not Available	538	Open in IMG/M
3300027956\|Ga0209820_1028422	All Organisms → Viruses → Predicted Viral	1448	Open in IMG/M
3300029930\|Ga0119944_1009659	All Organisms → Viruses → Predicted Viral	1464	Open in IMG/M
3300031758\|Ga0315907_10376100	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1150	Open in IMG/M
3300031786\|Ga0315908_10315978	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1307	Open in IMG/M
3300031857\|Ga0315909_10029003	Not Available	5400	Open in IMG/M
3300031857\|Ga0315909_10216498	All Organisms → Viruses → Predicted Viral	1502	Open in IMG/M
3300033992\|Ga0334992_0000038	Not Available	121667	Open in IMG/M
3300034061\|Ga0334987_0017178	Not Available	6577	Open in IMG/M
3300034063\|Ga0335000_0640212	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	592	Open in IMG/M
3300034073\|Ga0310130_0000959	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	17403	Open in IMG/M
3300034073\|Ga0310130_0002434	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	8687	Open in IMG/M
3300034082\|Ga0335020_0044716	All Organisms → cellular organisms → Bacteria → Proteobacteria	2357	Open in IMG/M
3300034093\|Ga0335012_0000862	Not Available	19869	Open in IMG/M
3300034095\|Ga0335022_0575162	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	574	Open in IMG/M
3300034101\|Ga0335027_0253351	All Organisms → cellular organisms → Bacteria	1215	Open in IMG/M
3300034102\|Ga0335029_0000004	Not Available	359425	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.36%
Engineered	Engineered	3.64%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	91.82%
Terrestrial	Environmental → Terrestrial	4.55%
Wastewater	Engineered → Wastewater	3.64%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	64.55%
Marine	Environmental → Aquatic → Marine	27.27%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	4.55%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	3.64%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	27.27%
Coastal	Environmental → Aquatic → Marine → Coastal	18.18%
Lentic	Environmental → Aquatic → Freshwater → Lentic	16.36%
Unclassified	Environmental → Aquatic → Marine → Unclassified	8.18%
Sediment	Environmental → Aquatic → Freshwater → Sediment	7.27%
Lotic	Environmental → Aquatic → Freshwater → Lotic	6.36%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	5.45%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	4.55%
Petrochemical	Engineered → Wastewater → Industrial Wastewater → Petrochemical	3.64%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	0.91%
Creek	Environmental → Aquatic → Freshwater → Creek	0.91%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	26.36%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	18.18%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	14.55%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	8.18%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	7.27%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	6.36%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	5.45%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	4.55%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified	3.64%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	1.82%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	0.91%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.91%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	10.91%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	10.91%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	7.27%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	7.27%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	7.27%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	6.36%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	5.45%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	5.45%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	4.55%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	3.64%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	3.64%
Hydrocarbon Resource Environments	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments	3.64%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	2.73%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	2.73%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	2.73%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	1.82%
Marine Plankton	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton	1.82%
Fracking Water	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water	1.82%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.91%
Lake	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake	0.91%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	0.91%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	0.91%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.91%
Aquatic	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic	0.91%
Sinkhole	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Sinkhole	0.91%
River Water	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water	0.91%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	0.91%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.91%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000558	Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011	Engineered	Open in IMG/M
3300001580	Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes from Suncor taillings pond 6 2012TP6_6	Engineered	Open in IMG/M
3300001848	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM47, ROCA_DNA265_0.2um_TAP-S_3a	Environmental	Open in IMG/M
3300001850	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM37, ROCA_DNA234_0.2um_Ob_C_2a	Environmental	Open in IMG/M
3300002161	Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA	Environmental	Open in IMG/M
3300002202	Freshwater microbial communities from San Paulo Zoo lake, Brazil - SEP 2012	Environmental	Open in IMG/M
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003393	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD	Environmental	Open in IMG/M
3300003412	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD	Environmental	Open in IMG/M
3300003806	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH16Oct07	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300005077	Water filled karst sinkhole microbial communities from Little Salt Spring, North Port, Florida - Phototrophic mat 2014	Environmental	Open in IMG/M
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental	Open in IMG/M
3300005805	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA	Environmental	Open in IMG/M
3300006029	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA	Environmental	Open in IMG/M
3300006030	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA	Environmental	Open in IMG/M
3300006037	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_>0.8_DNA	Environmental	Open in IMG/M
3300006639	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11	Environmental	Open in IMG/M
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental	Open in IMG/M
3300007169	Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projects	Environmental	Open in IMG/M
3300007171	Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface layer) 8 sequencing projects	Environmental	Open in IMG/M
3300007559	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541	Environmental	Open in IMG/M
3300007960	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG	Environmental	Open in IMG/M
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental	Open in IMG/M
3300008110	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA	Environmental	Open in IMG/M
3300008113	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009165	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009169	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009243	Microbial communities of water from Amazon river, Brazil - RCM13	Environmental	Open in IMG/M
3300009419	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT	Environmental	Open in IMG/M
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental	Open in IMG/M
3300012006	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B	Environmental	Open in IMG/M
3300012348	Freshwater microbial communities from Coldwater Creek, Ontario, Canada - S44	Environmental	Open in IMG/M
3300012665	Freshwater microbial communities from Talbot River, Ontario, Canada - S11	Environmental	Open in IMG/M
3300012933	Freshwater microbial communities from Tributary to Mariposa, Ontario, Canada - S7	Environmental	Open in IMG/M
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental	Open in IMG/M
3300013005	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG	Environmental	Open in IMG/M
3300013087	Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L	Environmental	Open in IMG/M
3300013285	Freshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y	Environmental	Open in IMG/M
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental	Open in IMG/M
3300017722	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017788	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L	Environmental	Open in IMG/M
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental	Open in IMG/M
3300020109	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015016 Mahale Deep Cast 400m	Environmental	Open in IMG/M
3300020151	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1	Environmental	Open in IMG/M
3300020160	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1	Environmental	Open in IMG/M
3300020161	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1	Environmental	Open in IMG/M
3300020172	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1	Environmental	Open in IMG/M
3300020204	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015008 Mahale S9 surface	Environmental	Open in IMG/M
3300020222	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015034 Kigoma Deep Cast 250m	Environmental	Open in IMG/M
3300020527	Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300021091	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m	Environmental	Open in IMG/M
3300021963	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D	Environmental	Open in IMG/M
3300022072	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)	Environmental	Open in IMG/M
3300022198	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)	Environmental	Open in IMG/M
3300022200	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)	Environmental	Open in IMG/M
3300022748	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300025357	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)	Environmental	Open in IMG/M
3300025451	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025585	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025896	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300027721	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027785	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)	Environmental	Open in IMG/M
3300027805	Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)	Environmental	Open in IMG/M
3300027956	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300029930	Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727	Environmental	Open in IMG/M
3300031758	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123	Environmental	Open in IMG/M
3300031786	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124	Environmental	Open in IMG/M
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental	Open in IMG/M
3300033992	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035	Environmental	Open in IMG/M
3300034061	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028	Environmental	Open in IMG/M
3300034063	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053	Environmental	Open in IMG/M
3300034073	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL	Environmental	Open in IMG/M
3300034082	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088	Environmental	Open in IMG/M
3300034093	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072	Environmental	Open in IMG/M
3300034095	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091	Environmental	Open in IMG/M
3300034101	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107	Environmental	Open in IMG/M
3300034102	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Draft_101817411	3300000558	Hydrocarbon Resource Environments	DDYNQIYVWIDDNDENVELSPHFDYLEDAEQWFQRIKQEVTK*
Draft_114961861	3300000558	Hydrocarbon Resource Environments	MKLLYDDYNQIYVWVDDHNEDDELSPHFDYEEDAEQWFLRIKEEVTK*
Draft_118221701	3300000558	Hydrocarbon Resource Environments	KLLYDDYNQIYVWIDDNDENVELSPHFDYLEDAEQWFQRIKQEVTK*
Draft_1000186635	3300001580	Hydrocarbon Resource Environments	MKLLYDDYNQIYVWIDDNDENVELSPHFDYLEDAEQWFQRIKQEVTK*
RCM47_11310913	3300001848	Marine Plankton	MKLLYDDYNQIYVWVDDNNEDHELSPRFDYEEDAAQWFDRMKQEVNKDGKR*
RCM37_11385262	3300001850	Marine Plankton	MKMLYDDINQIYVWVDDEDENIQLSPHFDYEEDAEQWFIRMKQELNLKQ*
JGI24766J26685_100518042	3300002161	Freshwater And Sediment	MKMLYDDYNTVYMWVDDQDENIELSPRFDYVEDCEEWFHRMKKELNNDKH*
metazooDRAFT_12301622	3300002202	Lake	VTMKLLCDDRNQVYVWVDDDNEDIHLSPRFDYEEDAENWYKQIKKKVQDEKNLL*
B570J29032_1088800092	3300002408	Freshwater	MKLLHDDYNLVYVWVDDDNEDIELSPHFDYEEDADQWFERMKKEVTKNER*
JGI25908J49247_100075567	3300003277	Freshwater Lake	MTLILDDYNQVYVWVDDVEHNRQLSPCFDYEEDALQWKERMKKELEE*
JGI25908J49247_100326126	3300003277	Freshwater Lake	MILICDDYNEIYVWVDDNDHNHELSPHFDYEEDAHVWKERMKKEMLK*
JGI25909J50240_10029435	3300003393	Freshwater Lake	MTXILDDYNQVYVWVDDVEHNRQLSPCFDYEEDALQWKERMKKELEE*
JGI25912J50252_100134082	3300003412	Freshwater Lake	MTLILDDYNQVYVWVDDVEHNRQLSPCXDYEEDALQWKERMKKELEE*
Ga0007864_10012747	3300003806	Freshwater	MKLLCDDFNEVYIWVDDYDENIEFSPHFDYEEDALLWRERMKQELIK*
Ga0069718_134717612	3300004481	Sediment	MKLILDDYNQIYVWVEDHNEDLELSPHFDYEEDAIRWRDRMKQELLKERK*
Ga0069718_147033922	3300004481	Sediment	MKLLCDDYKEIYVWVDDLDEDHELSPHFDYEEDAVRWRDRMKQELLREKK*
Ga0071116_100416411	3300005077	Sinkhole	MKLLCDDFNEVYVWVDDWDENIELSPHFDYEEDAIQWRDRMKELLNDQNT*
Ga0078894_103270232	3300005662	Freshwater Lake	MKLLCDDYKEVYVWVDDMDEDIELSPHFDYEEDAIRWRDRMKQELLREKK*
Ga0078894_110133332	3300005662	Freshwater Lake	MKLICDDYNQVYVWVDDNNEDHELSPKFDYEEDALEWKERIKEELKK*
Ga0079957_10104902	3300005805	Lake	MKLFCDDLLQVYVWVEDHDENIELSPHFDYEEDAFQWRDRVKELLSKNNLGYIKL*
Ga0075466_100577010	3300006029	Aqueous	MKLLEDEFNGVYVWVEELDENIELSPHFDYEEDAIQWRDTMKAKLANFG*
Ga0075470_1000232810	3300006030	Aqueous	MKLISDEFQGVYVWVDDENHDDELSPHFDYEEDAIQWKERIKQELYNKSE*
Ga0075465_100486022	3300006037	Aqueous	MKLFEDEFNGIYVWVDELDENIELSPHFDYEDDAIQWRDTMKSKLG*
Ga0079301_11514051	3300006639	Deep Subsurface	MKLLADDYKEIYVWVDDLDEDYELSPHFDYEEDAIRWRDRMKQELLREKK*
Ga0075464_100098457	3300006805	Aqueous	MQRLKMILICDDYNEIYVWVDDNDHNHELSPHFDYEEDAHVWKERMKKEMLK*
Ga0102976_10289082	3300007169	Freshwater Lake	MKLLCDDHNQVYVWVSDLDENDELSPHFDYEEDAALWKERMSAEVLRESGFVPDDWK*
Ga0102977_11464004	3300007171	Freshwater Lake	MKLILDDYNGVYVWVADEDEDDELSPHFDYEEDALQWKQRMEALLKQ*
Ga0102828_10491143	3300007559	Estuarine	MILICDDYNEVYIWVDDEDHDHELSPHFDYEDDALEWRERIKKEVS*
Ga0099850_11653862	3300007960	Aqueous	MRLICDDFQNVYVWVEDHDENIELSPHFDYEEDAIQWKLRIEQLLKEQYVSTN*
Ga0114340_10062736	3300008107	Freshwater, Plankton	MKLLCDDINQIYVWVDDSDEDIELSPHFDYEEDAADWRERMKRELDDKGNY*
Ga0114343_10144468	3300008110	Freshwater, Plankton	MKLLCDDINQIYVWVDDSDENIELSPHFDYEEDAADWRERMKRELDDEGNY*
Ga0114346_10060197	3300008113	Freshwater, Plankton	MKLLCDDINQIYVWVDDSDENIELSPHFDYEEDAADWRERMKRELDDKGNY*
Ga0105098_100133545	3300009081	Freshwater Sediment	MKLLCDDHKEIYVWVDDMDEDVELSPHFDYEEDAVRWRDRMKQELLKEKK*
Ga0105103_100492033	3300009085	Freshwater Sediment	MQLICDEIQNVYVWVEDHDENIELSPHFDYEEDALIWKDRIEKLLKE*
Ga0105102_102719872	3300009165	Freshwater Sediment	MRLICDDFQNVYVWVEDHDENIELSPHFDYEEDALQWKLRIEQLLKE*
Ga0105097_102085522	3300009169	Freshwater Sediment	MKLICDDYNQIYVWVEDMDDNAELSPHFDYEEDALQWRNRVTELILKEKNAKS*
Ga0103860_100606292	3300009243	River Water	MRLICDDYNQVYIWVEDFDENIELSPRFDYEEDAIQWKNRIEDLLKETK*
Ga0114982_100001364	3300009419	Deep Subsurface	MKLLCDDYKEVYVWVDDLDEDHELSPHFDYEEDAIRWRDRMKQELLREKK*
Ga0114982_10701202	3300009419	Deep Subsurface	MILICDDYNEIYVWVDDNDQDLELSPHFDYEEDAHEWKERMKKEVNK*
Ga0129333_1000351310	3300010354	Freshwater To Marine Saline Gradient	MRLICDDYNQIYVWVEDLDENIELSPRFDYEEDAFQWRDRVASLLKGKNEN*
Ga0129333_100334506	3300010354	Freshwater To Marine Saline Gradient	LIFIKGINMRLFCDDIQQIYVWVEDHDENIELSPHFDYEEDAIQWRDRMQELINKENSQ*
Ga0129333_100349085	3300010354	Freshwater To Marine Saline Gradient	MKLICDDYNQVYVWVDDVDENLELSPHFDYEEDAVAWKERMKQELSK*
Ga0129333_100617733	3300010354	Freshwater To Marine Saline Gradient	MKLFCDDLLQVYVWVEDHDENIELSPHFDYEEDAFQWRDRVKELLSKNNLGYKKL*
Ga0129333_101240167	3300010354	Freshwater To Marine Saline Gradient	MRLLCDDYMQTYVWVEEYDENIELSPHFDYEEDAIQWRDRMEELLKQEKK*
Ga0129333_101290028	3300010354	Freshwater To Marine Saline Gradient	MSTIQGNKMKLFCDDFQQIYVWVEDYDENIELSPHFDYEEDAIQWYERIKTLVEKNESVNE*
Ga0129333_102201723	3300010354	Freshwater To Marine Saline Gradient	MRLICDDFQNVYVWVEDHDENIELSPHFDYEEDAIQWKLRIEQLLKEQHVSTN*
Ga0129333_115620712	3300010354	Freshwater To Marine Saline Gradient	MQLICDDVNNIYVWVEDDDENMELSPHFDYEEDALLWKERMEQLLKE*
Ga0119955_11641861	3300012006	Freshwater	MKLLYNDYQQIYVWVDDYNEDDELSPHFDYEEDAEQWYHRMKAEVNENKNG*
Ga0157140_100000145	3300012348	Freshwater	MILICDDYNEVYVWVDDEDHDHELSPHFDYEEDAMAWKERMKNEVYK*
Ga0157210_10004467	3300012665	Freshwater	MTLILDDYNQVYVWVEDDDHDHHLSPCFDYEEDAIQWKHRLRDLLQEKKK*
Ga0157210_10360692	3300012665	Freshwater	MKLLADDYNEVYVWVDDEDENLQLSPSFDYEEDALQWRDRMKKELNG*
Ga0157210_10681413	3300012665	Freshwater	AMKLIADDYNEIYVWVDDEDEDLQLSPSFDYEEDAIQWRDRMKRELNG*
Ga0157211_10148633	3300012933	Freshwater	MILICDDYNEVYIWVDDEDHDHELSPHFDYEEDALKWRERIKKEVTK*
Ga0164293_108489741	3300013004	Freshwater	MKLLSDEYNGIYVWVEDNDENIELSPHFDYEDDALLWRYRMMELHKKD*
Ga0164292_107299031	3300013005	Freshwater	MKLLCDDYKEIYVWVDDLNEDLELSPHFDYEEDAVRWRDRMKQEL
Ga0163212_10756621	3300013087	Freshwater	YNMRLICNDHDQVYVWVDDLDETIELSPHFDYEEDAIVWKKRNEDQTGQ*
Ga0136642_10009054	3300013285	Freshwater	MKLLADEYNGIYVWVEELDENIELSPHFDYEEDAIKWRDTMRTKLV*
Ga0177922_101577722	3300013372	Freshwater	MKLLLDDYNQVYVWVDDLNEDDHLSPCFDYEQDALQWANRIKTELNKMGNTQ*
Ga0181347_11986932	3300017722	Freshwater Lake	MKLLLDDYNQVYVWVDDLNEDDHLSPCFDYEQDALQWANRIKTELNKMGNTQ
Ga0169931_100952763	3300017788	Freshwater	MKRNGKGIKMKLLCDDIQGIYVWVEEHDENIELSPHFDYQEDAEQWRERVSKLLKDNKHE
Ga0207193_17261222	3300020048	Freshwater Lake Sediment	MKLLCDDYKEIYVWVDDMNEDIELSPHFDYEEDAVRWRDRMKQELLREKK
Ga0194112_107634421	3300020109	Freshwater Lake	NLEADCNMRLICNDHDQVYVWVDDLDETIELSPHFDYEEDAIVWRKRIEDKTGQ
Ga0211736_109098652	3300020151	Freshwater	MKLLCDDYKEVYVWVDDLDEDHELSPHFDYEEDAIRWRDRMKQELLREKK
Ga0211733_102576503	3300020160	Freshwater	MKLLLDDYNQVYVWVDDLNEDDHLSPCFDYEQDALQGAKRVKTELNKMGNTQ
Ga0211726_101833093	3300020161	Freshwater	MKLLLDDYNQVYVWVDDLNEDDHLSPCFDYEQDALQWANRVKTELNKMGNTQ
Ga0211729_106807464	3300020172	Freshwater	DDYKEVYVWVDDLDEDHELSPHFDYEEDAIRWRDRMKQELLREKK
Ga0194116_100020888	3300020204	Freshwater Lake	MRLICNDHDQVYVWVDDLDETIELSPHFDYEEDAIVWRKRIEDKTGQ
Ga0194125_101928084	3300020222	Freshwater Lake	MRLICNDHDQVYVWVDDLDETIELSPHFDYEEDAIVWRKR
Ga0194125_101987264	3300020222	Freshwater Lake	NLEADYNMRLICNDHDQVYVWVDDLDETIELSPHFDYEEDAIVWRKRIEDQTGQ
Ga0208232_10235642	3300020527	Freshwater	MKLLHDDYNLVYVWVDDDNEDIELSPHFDYEEDAVRWRNRMKQELLREKK
Ga0194133_1002025112	3300021091	Freshwater Lake	MRLICNDHDQVYVWVDDLDETIELSPHFDYEEDAIVWRKRIEDQTG
Ga0222712_1000291821	3300021963	Estuarine Water	MILICDDYNEVYVWVDDNDHDHELSPHFDYEEDAIAWKERIKQEVTK
Ga0222712_1000473217	3300021963	Estuarine Water	MILICDDYNEVYVWVDDEDHDHELSPHFDYEEDALEWRERMKKEVYK
Ga0222712_100190956	3300021963	Estuarine Water	MKLICDDYNQIYVWVEDLDENVELSPRFDYEEDAVIWKQRLEELLKVNK
Ga0222712_100270223	3300021963	Estuarine Water	MTLICDDYNEVYVWVDDDDHDHELSPHFDYEEDAHAWKERMKQEVTK
Ga0222712_102581263	3300021963	Estuarine Water	MILICDDYNEVYVWVDDEDHDHELSPHFDYEEDAHEWKERMKKEVYK
Ga0222712_103357753	3300021963	Estuarine Water	MKLLADDYDEVYVWVDDYDEDIRLSPCFDYEEDAIQWRDRMRKELNE
Ga0222712_104553943	3300021963	Estuarine Water	MILICDDYNEVYVWVDDDDHDHELSPHFDYEEDAIAWRERIKQEVTK
Ga0222712_107948712	3300021963	Estuarine Water	MILICDDYNEVYVWVDDEDHDHELSPHFDYEEDAIAWRERIKKEVSK
Ga0196889_10372724	3300022072	Aqueous	MKLLEDEFNGVYVWVEELDENIELSPHFDYEEDAIQWRDTMKAKLANFG
Ga0196905_11173531	3300022198	Aqueous	DFQNVYVWVEDHDENIELSPHFDYEEDAIQWKLRIEQLLKEQYVSTN
Ga0196901_12448682	3300022200	Aqueous	MRLICDDFQNVYVWVEDHDENIELSPHFDYEEDAIQWKLRIEQLLKEQHVSTN
Ga0228702_11351812	3300022748	Freshwater	MKLLCDDYRQVYVWVDDLDEDDELSPCFDYEEDAIQWKERIKQEIVDK
Ga0244775_107644283	3300024346	Estuarine	MILICDDYNEVYIWVDDEDHDHELSPHFDYEDDALEWRERIKKEVS
Ga0208383_10031835	3300025357	Freshwater	MKLLCDDFNEVYIWVDDYDENIEFSPHFDYEEDALLWRERMKQELIK
Ga0208426_10275312	3300025451	Aqueous	MKLFEDEFNGIYVWVDELDENIELSPHFDYEDDAIQWRDTMKSKLG
Ga0208426_10498671	3300025451	Aqueous	KMILICDDYNEIYVWVDDNDHNHELSPHFDYEEDAHVWKERMKKEMLK
Ga0208546_10118273	3300025585	Aqueous	MKLISDEFQGVYVWVDDENHDDELSPHFDYEEDAIQWKERIKQELYNKSE
Ga0208916_100072757	3300025896	Aqueous	MQRLKMILICDDYNEIYVWVDDNDHNHELSPHFDYEEDAHVWKERMKKEMLK
Ga0209492_10915072	3300027721	Freshwater Sediment	MKLICDDYNQIYVWVEDMDDNAELSPHFDYEEDALQWRNRVTELILKEKNAKS
Ga0209246_1000042814	3300027785	Freshwater Lake	MILICDDYNEIYVWVDDNDHNHELSPHFDYEEDAHVWKERMKKEMLK
Ga0209229_100935375	3300027805	Freshwater And Sediment	VKLLCDDYKQVYVWVNDLDEDDELSPRFDYEEDAILWKERLSAEILRESGFVPDDWK
Ga0209229_101125461	3300027805	Freshwater And Sediment	MKLLADEWNQVYVWVDDFDENIELSPHFDYEEDALAWKERMKGELSK
Ga0209229_104713042	3300027805	Freshwater And Sediment	MKMLYDDYNTVYMWVDDQDENIELSPRFDYVEDCEEWFHRMKKELNNDKH
Ga0209820_10284224	3300027956	Freshwater Sediment	MKLLCDDHKEIYVWVDDMDEDVELSPHFDYEEDAVRWRDRMKQELLKEKK
Ga0119944_10096594	3300029930	Aquatic	MRLICDDYDQVYVWVEDLDENIELSPRFDYEEDAVQWKHRLEELLKVNK
Ga0315907_103761002	3300031758	Freshwater	MKLLCDDYKEIYVWVDDRNEDIELSPHFDYEEDAIRWRDRMKQELLRERK
Ga0315908_103159783	3300031786	Freshwater	MTLILDDYNQVYVWVEDDDHDHHLSPCFDYEEDAIQWKHRLRDLLQEKKK
Ga0315909_100290039	3300031857	Freshwater	MRLLHDDYNLVYVWVDDNDENEELSPHFDYEDDAFQWFERMKVEVTKNER
Ga0315909_102164983	3300031857	Freshwater	MKLLCDDINQIYVWVDDSDENIELSPHFDYEEDAADWRERMKRELDDKGNY
Ga0334992_0000038_48960_49112	3300033992	Freshwater	MKLLCDDYKEIYVWVDDLNEDLELSPHFDYEEDAVRWRDRMKQELLREKK
Ga0334987_0017178_5996_6139	3300034061	Freshwater	MKLLADEWNQVYVWVDDYDEDKELSPRFDYEEDADQWYERMKQELLK
Ga0335000_0640212_153_296	3300034063	Freshwater	MQLICDDVNNIYVWVEDDDENVELSPHFDYEEDALLWKERMEQLLKE
Ga0310130_0000959_16572_16715	3300034073	Fracking Water	MRLICDDIQNVYVWVEDHDENIELSPHFDYEEDALIWKDRIEKLLKE
Ga0310130_0002434_5679_5822	3300034073	Fracking Water	MHLICDDFQNVYVWVEDHDENIELSPHFDYEEDALQWKLRIEKLLKE
Ga0335020_0044716_281_433	3300034082	Freshwater	MKLLCDDYKEIYVWVDDIDEDLELSPHFDYEEDAVRWRNRMKQELLREKK
Ga0335012_0000862_13754_13906	3300034093	Freshwater	MKLLHDDYNLVYVWVDDDNEDIELSPHFDYEEDADQWFERMKKEVTKNER
Ga0335022_0575162_452_574	3300034095	Freshwater	MKLLHDDYNLVYVWVDDDNEDIELSPHFDYEEDADQWFERM
Ga0335027_0253351_707_862	3300034101	Freshwater	MRLFCDDIQQVYVWVEDHDENIELSPHFDYEEDAIQWRDRMQELINKENSR
Ga0335029_0000004_299131_299283	3300034102	Freshwater	MKLLHDDYNLVYVWVDDMNEDIELSPHFDYEDDAFQWFERMKKEVTKNER

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087103

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences