Scaffold Ga0310150_000396

Overview

Basic Information

• Taxon OID: 3300033987
• Scaffold ID: Ga0310150_000396
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - K-7-6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26096
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.812
  • Long. (^o): -98.262
  • Depth (m): 2943

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022008	Metagenome / Metatranscriptome	216	Y
F103496	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310150_000396_228_461	F103496	N/A	MSLNDRIRKLPLTKLIALCFTIFTCVLIVLDVTTLCPLTERSADLLKWLGSTIIVGYFGKSAYEHKIDTTTEKKVNS
Ga0310150_000396_464_817	F022008	AGG	MTLSDIEILQSTLRDLSKQVQKLSEENRVSFNHIHDRLTRIETQMSERERQFNRYEKTLENHEVRIRNVEGELGTLRDVPERLWRVSMSNSKLTGMVAAAGGVGGLVATIIVKMLGD