Scaffold Ga0310138_006251

Overview

Basic Information

• Taxon OID: 3300033986
• Scaffold ID: Ga0310138_006251
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - M2-7-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4120
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022008	Metagenome / Metatranscriptome	216	Y
F066897	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310138_006251_1377_1739	F022008	AGGA	MTMTEIEALREALNDLSKQVQTLSDENRTSFGRIYDRLTKIETQMSERECQFKRYEKTIENHETRIRAVEGELGTLRDVPERLWRVSMSNAKLTGMVAAAGGVGGLVATIITVVLKSLGE
Ga0310138_006251_828_1145	F066897	GGAGG	MSSKWFWLILIAVILFSAIFLWHNHTSTQETLIKAQETIKETKQALRENQDALQKIDEITQKLQDVTRMAKKAGDKRVEEIKYVSDDDFLNIANQYSALMVERVE