3300033986: Fracking water microbial communities from deep shales in Oklahoma, United States - M2-7-3

Overview

Basic Information

• IMG/M Taxon OID: 3300033986
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118431 | Gp0324328 | Ga0310138
• Sample Name: Fracking water microbial communities from deep shales in Oklahoma, United States - M2-7-3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 166399291
• Sequencing Scaffolds: 15
• Novel Protein Genes: 18
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus odorifer	1
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → planetary subsurface zone → fracking liquid
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Alt. (m): N/A
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022008	Metagenome / Metatranscriptome	216	Y
F038199	Metagenome	166	Y
F058178	Metagenome / Metatranscriptome	135	N
F063614	Metagenome / Metatranscriptome	129	Y
F066897	Metagenome / Metatranscriptome	126	Y
F082560	Metagenome	113	N
F087072	Metagenome / Metatranscriptome	110	Y
F088079	Metagenome / Metatranscriptome	109	N
F093744	Metagenome / Metatranscriptome	106	Y
F101010	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0310138_000628	All Organisms → cellular organisms → Bacteria	24408
Ga0310138_006251	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae	4120
Ga0310138_006374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4045
Ga0310138_007657	All Organisms → Viruses → Predicted Viral	3432
Ga0310138_011415	All Organisms → cellular organisms → Bacteria	2368
Ga0310138_011416	All Organisms → Viruses → Predicted Viral	2368
Ga0310138_023376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus odorifer	1219
Ga0310138_025675	Not Available	1117
Ga0310138_029154	Not Available	993
Ga0310138_030824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	943
Ga0310138_032063	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	909
Ga0310138_032705	Not Available	891
Ga0310138_047562	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	606
Ga0310138_051219	Not Available	560
Ga0310138_055942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0310138_000628	Ga0310138_000628_15877_16095	F087072	LRQNLPSVACAEIQLSEEELSIIAGALYCANNEDIICFVDKYKYPCSGYSFDEVAELQEKLSEEINKLIEGK
Ga0310138_000628	Ga0310138_000628_2769_2987	F063614	MTYRKLYITIDTLVKTGLEKVNVLGVDEAQNDLWQIYEICQELMAFWDSELTEERIDELDEIMAELPLLKRV
Ga0310138_000628	Ga0310138_000628_6241_6495	F038199	MEYTQAEFLQIIQQYNSTDRRVIKTNLKRIMNIYNIKPADITALGYTSRNVYAWTNKSTKNIPLFEQALRISTRFNFNITEFLK
Ga0310138_006251	Ga0310138_006251_1377_1739	F022008	MTMTEIEALREALNDLSKQVQTLSDENRTSFGRIYDRLTKIETQMSERECQFKRYEKTIENHETRIRAVEGELGTLRDVPERLWRVSMSNAKLTGMVAAAGGVGGLVATIITVVLKSLGE
Ga0310138_006251	Ga0310138_006251_828_1145	F066897	MSSKWFWLILIAVILFSAIFLWHNHTSTQETLIKAQETIKETKQALRENQDALQKIDEITQKLQDVTRMAKKAGDKRVEEIKYVSDDDFLNIANQYSALMVERVE
Ga0310138_006374	Ga0310138_006374_3622_3957	F101010	MILFNNIYATVWSVEDKGNYVKGRISTSEKNKEGEYVNSNWFVTFVGKAKEPALALSTRDRIKIISGKISNTTTGEGKDKKSFVNVVIFDFEKLNTSNNNNATNDMDDLPF
Ga0310138_007657	Ga0310138_007657_3182_3430	F038199	MYYTQAEFLNIIKQYSSTDRKVIKSNLKRIMDIYNIKPADIAALGYTSRNVYAWTNKSTKNIPLFEQALRISTRFNFNITEFL
Ga0310138_011415	Ga0310138_011415_2140_2367	F038199	MIQYTQAEFLQLIQQYNSTDRKVIKSNLKRIMDIYNIKPADIAALGYTSRNVYAWTNKSTKNIPLFEQALRISTRF
Ga0310138_011416	Ga0310138_011416_127_315	F093744	MGFKIGDRVEVNYPVDDFQGHIGIVKKIITDTELIPGKTVVICYWAFLDKEIAFYESSLDLI
Ga0310138_023376	Ga0310138_023376_788_1045	F038199	MMQYTQAEFLQLIQQYNSTDRKVIKSNLKRIMDVYGIKPADIISLGYNPRNVYAWTNKSTNNIPLFEQALNIAVHFDFSITEFLK
Ga0310138_025675	Ga0310138_025675_613_966	F022008	MTVSEIEMLREALADLSKQVQALSEDNRASFGRIYDRLTKIETQMTERECQFKKFEKILDNHETRIRTVEGELRTLRDVPERLWRVSMSNAKLTGMIAAAGGMGGLVATLIVQILGD
Ga0310138_029154	Ga0310138_029154_1_360	F058178	MKLTWIIEELRKELQTQQHIASGALAASLRMAKDGNDYVVIGRHYSYWVNFGRRAGSLPPITAIANWVAIKGLPTEATWPIAINIAAKGTPGQPYVVWKEGNSIKRTDFVSDTIERCKER
Ga0310138_030824	Ga0310138_030824_483_722	F063614	MNRRFKKMTYKRLYITIDTLVKTGFEKVNVLGIEDAQNDLWQIYDICQELMAFWDSELTEERIDELEEIIAELPLLKRV
Ga0310138_032063	Ga0310138_032063_44_304	F088079	MLIEKAIWLENVPFRSIDEAIGGQNCSVYFVESMFVGQSCTFCTSRLGNLAPNAYRMLTRLDVFIHICEIYKVDITFFKSNVVSTK
Ga0310138_032705	Ga0310138_032705_478_873	F082560	VYAIVWRAWLPFNGGINVSEKLIVKKIQEWFKAKGGVCHKVHGGPMSAGFPDIIGCMRGRTWVVEVKVPRAKPRVPKAKRNEASQEIQEWLAKGATMLQAKTLYDWQKAGAIVLVATSIEDMEQKFKEGQI
Ga0310138_047562	Ga0310138_047562_371_604	F088079	MLTEKAIWLENVPFRSIDETIGGQNCSVYFVESMIVGQSCTFCTSILGNLAPNPYRMLTRLDVFIHICEIYKVDITFF
Ga0310138_051219	Ga0310138_051219_107_364	F038199	MMQYTQAEFLQLIQQYNSTDRSIIKANLKRIMDIYGIKPADIISLGYSPRNVYAWTNKSTKNIPLFEQALNIAVNFNFSITEFLK
Ga0310138_055942	Ga0310138_055942_274_492	F087072	LRQNLPSVACAEIQLSEEELSIIAGALYCANNEDIICFVDKYKYPCAGYSFDEVAELQEKLSEEINKLIENR