Scaffold Ga0310138_000628

Overview

Basic Information

• Taxon OID: 3300033986
• Scaffold ID: Ga0310138_000628
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - M2-7-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24408
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (82.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038199	Metagenome	166	Y
F063614	Metagenome / Metatranscriptome	129	Y
F087072	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310138_000628_15877_16095	F087072	GGA	LRQNLPSVACAEIQLSEEELSIIAGALYCANNEDIICFVDKYKYPCSGYSFDEVAELQEKLSEEINKLIEGK
Ga0310138_000628_2769_2987	F063614	AGGAGG	MTYRKLYITIDTLVKTGLEKVNVLGVDEAQNDLWQIYEICQELMAFWDSELTEERIDELDEIMAELPLLKRV
Ga0310138_000628_6241_6495	F038199	GAGG	MEYTQAEFLQIIQQYNSTDRRVIKTNLKRIMNIYNIKPADITALGYTSRNVYAWTNKSTKNIPLFEQALRISTRFNFNITEFLK