Scaffold Ga0334989_0028336

Overview

Basic Information

• Taxon OID: 3300033984
• Scaffold ID: Ga0334989_0028336
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3003
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000947	Metagenome / Metatranscriptome	824	Y
F005733	Metagenome / Metatranscriptome	391	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334989_0028336_1012_1173	F005733	GAGG	MECIGGFMRSHYMLPSGVCSRRIGPADAMVIAVTVGLNATQNTTFSKFIVLFY
Ga0334989_0028336_1980_2210	F000947	N/A	LCCFNKFVNHGDRRGNTAQALAQWLHPVASSEAPDVIHRAMRPASYHCIAMAIEIAIDSPAFFVAVDLLSPTNIAK
Ga0334989_0028336_267_377	F005733	GAGG	MEHISGFMRSHYMLPSGVCLRRIGPADAMVIAVAVV