NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0021408

Scaffold Ga0334982_0021408


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0021408 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3761
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (100.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F003212Metagenome / Metatranscriptome500Y
F005558Metagenome396Y
F037113Metagenome / Metatranscriptome168Y
F038999Metagenome164Y
F059896Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0021408_228_386F000821AGGAGGMNREYLEAKVDLCLNQAEIDLQQKEIARAIANLRRANSALTQLFGFEEEENE
Ga0334982_0021408_2473_2643F059896AGGCGGMDKCLWCDNMARVTVSGGYVPRYLCAFHASELCESIGDKAGAIKFAQLMAGDRVSA
Ga0334982_0021408_2643_3089F038999GGAGMTNTQETKGKLSFPCSCNGCRNYPTRPAEIWHESQIASKAQGYFFTRETMRFFNSRIADFKPVGISPRGVDSLMVIVSNKRDNDPRYYEIVTLCPYGELAREWATDSTGAPITQYETLNKARKSARWNCTIAPQLCDCHGCQLDKAGR
Ga0334982_0021408_511_651F037113AGGAGGMNKWTVWVGAYEVNWQHYAYKIDAERVAEFYREVKGYDDVVIKEVA
Ga0334982_0021408_744_887F005558GGAGMSESISWSELAELTHATQVEHFNFCSCEDLDPHEHPYADCPKGEGNE
Ga0334982_0021408_880_1044F003212GGAGGMKDRYLVTLEIETYDGDPKSWNWDYIFTGEDDIKVIETQWKGRVLPTSEGESNE
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