Scaffold Ga0334982_0017025

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0017025
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4263
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F003863	Metagenome	464	Y
F037113	Metagenome / Metatranscriptome	168	Y
F073256	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0017025_2345_2509	F073256	GGAGG	VLSLSEVDTIQELKEWVSENMPGARLTEDSAGDIVIHTGLHSTMGGYLHEREGE
Ga0334982_0017025_2986_3126	F037113	GAGG	MSKWTVWAGGSEINWQHYAYRIDAERVAEFWREVKGYDDVVVEEVA
Ga0334982_0017025_3257_3415	F000821	AGGAGG	MNKEYLQAKADLCLDQAKIDLEQEEIARAIANLRRANSALSQLFGFEEEESE
Ga0334982_0017025_3909_4190	F003863	GGAGG	MESRQVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIIDSNSRLTVGVHTRANAVPPFGDPADAGEDEGYDGGEA