Scaffold Ga0334982_0000824

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334982_0000824

Scaffold Ga0334982_0000824

Overview

Basic Information
Taxon OID	3300033981 Open in IMG/M
Scaffold ID	Ga0334982_0000824 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	19401
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (88.57%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009948	Metagenome / Metatranscriptome	310	Y
F070855	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0000824_15999_16316	F009948	AGG	MSTFQLDPNQVALGVPSLGTTQVFTVTNSSVQSTAFGANTTMIRISCSSGHCHFQIGANPTASITTSPMMPNNFTEIIAVSPGQKIAVIKDAGVVAATFSVTELV
Ga0334982_0000824_5068_5211	F070855	N/A	MKHHKYNQHYQVKATKLHARADAALSIALACVIGIALAACLFFGLSA

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