Scaffold Ga0334978_0000213

Overview

Basic Information

• Taxon OID: 3300033979
• Scaffold ID: Ga0334978_0000213
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37144
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (79.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012570	Metagenome	279	Y
F019960	Metagenome / Metatranscriptome	226	Y
F028501	Metagenome / Metatranscriptome	191	Y
F097262	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334978_0000213_12140_12385	F097262	AGGCGG	MKCMQCGERTYVVNVINMAGGLRRQRRCKECKFNAYTAEVWLKATVNGAEPVYTKEEAALIKKKEVDVCRANEDRRKTDVT
Ga0334978_0000213_22746_23024	F012570	GGAGG	MQTIIVDGTTYKVKFDRDPIELAKAARKPYKPKKPKDIRKFPLWTESVSTAEYIRRFDVLNFLQAVRYDGASADTAAQYDSTIPLCEVFTDE
Ga0334978_0000213_23045_23272	F028501	AGGCGG	MKTITAKYDGFCAATGARILPGDIIQWQRGRSVLLERKAARIDTITLVGEHGPRDYYRNARGRCIDAPCCGCCTI
Ga0334978_0000213_9160_9312	F019960	N/A	MAVLLTFFIVMPILAFMYYDMYVATQAAVQEVKKMRELRREIQVERMYGR