Scaffold Ga0334977_0194093

Overview

Basic Information

• Taxon OID: 3300033978
• Scaffold ID: Ga0334977_0194093
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1025
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002245	Metagenome / Metatranscriptome	578	Y
F004051	Metagenome / Metatranscriptome	455	Y
F103246	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0194093_1_162	F103246	AGG	MSRQITVKVATTKVIKALEATLAKLENDYNTQAQKEAKFGKAQEAWRKEIGKWA
Ga0334977_0194093_300_479	F004051	GAGG	MTIGGKLYQVGDLFTTLKSKRTGVIKEIHPQASGSVRVLLELPSKETRWTSVSAKTLLG
Ga0334977_0194093_837_1025	F002245	N/A	FEAIIDLDKIPANLLPRLIALDTYSVTKMCKEATLHALGMSNVLPLANENNTWAEITIKGDN