Scaffold Ga0334977_0002072

Overview

Basic Information

• Taxon OID: 3300033978
• Scaffold ID: Ga0334977_0002072
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11667
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (71.11%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007265	Metagenome / Metatranscriptome	354	Y
F008402	Metagenome / Metatranscriptome	334	Y
F013514	Metagenome / Metatranscriptome	270	Y
F014121	Metagenome / Metatranscriptome	265	Y
F032252	Metagenome / Metatranscriptome	180	Y
F053262	Metagenome / Metatranscriptome	141	Y
F063620	Metagenome / Metatranscriptome	129	N
F090316	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0002072_10402_10569	F032252	GGAGG	MKLYRYKKDGHLYTLYEQLRPFYNLVAVPYFPNQGILVKSKRSISMNDFIVVAER
Ga0334977_0002072_10566_10772	F014121	GGAG	MTDTAYKVWEAFKAELIVEPTDDMKQALASSIRVISSIIHRDGVLANEPWLTHTAQELNEISYDVEAL
Ga0334977_0002072_11196_11327	F090316	GAGG	MPDDLQREEEIFLKALEEHKEKKSQEPTDKTTNTLPAVIAAVL
Ga0334977_0002072_2802_3065	F007265	GAG	MTFQPYNIVPGTEILHSLTDVYELCDEEEGMTYRVELNADNGGVYIKSGEKGHEEGSKNITEDMSIGNKQLSIVVARRILELYGELE
Ga0334977_0002072_3425_3628	F053262	AGGAG	MTKLTQEQRQTIEDALNSIPEVARKGMYGTMEGIEEQLARGDKLIFYMRPNELGGFNIDKMKVGEDD
Ga0334977_0002072_6847_7059	F063620	N/A	MTNHIIPKVAYIPLEYHMSVEDFLEVWKDMEMEEEPTQEDYDTFILERGKSYFYDMRGEIEDNIRLIEDN
Ga0334977_0002072_7061_7279	F008402	GAGG	MTIEITNQVRIQEHSDYWYTAEDTHLDVGCEGFTVSYWEFDKEKGDKRVQHICMNKEEALAIADAIYKLFKN
Ga0334977_0002072_7897_8052	F013514	GAGG	MLTIEELQKYLDDNNITFEEWMRANMITDEDRKYFDKIWVDAIYKNLGKDT