Basic Information | |
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Taxon OID | 3300033978 Open in IMG/M |
Scaffold ID | Ga0334977_0002072 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11667 |
Total Scaffold Genes | 45 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (71.11%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007265 | Metagenome / Metatranscriptome | 354 | Y |
F008402 | Metagenome / Metatranscriptome | 334 | Y |
F013514 | Metagenome / Metatranscriptome | 270 | Y |
F014121 | Metagenome / Metatranscriptome | 265 | Y |
F032252 | Metagenome / Metatranscriptome | 180 | Y |
F053262 | Metagenome / Metatranscriptome | 141 | Y |
F063620 | Metagenome / Metatranscriptome | 129 | N |
F090316 | Metagenome / Metatranscriptome | 108 | N |
Protein ID | Family | RBS | Sequence |
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Ga0334977_0002072_10402_10569 | F032252 | GGAGG | MKLYRYKKDGHLYTLYEQLRPFYNLVAVPYFPNQGILVKSKRSISMNDFIVVAER |
Ga0334977_0002072_10566_10772 | F014121 | GGAG | MTDTAYKVWEAFKAELIVEPTDDMKQALASSIRVISSIIHRDGVLANEPWLTHTAQELNEISYDVEAL |
Ga0334977_0002072_11196_11327 | F090316 | GAGG | MPDDLQREEEIFLKALEEHKEKKSQEPTDKTTNTLPAVIAAVL |
Ga0334977_0002072_2802_3065 | F007265 | GAG | MTFQPYNIVPGTEILHSLTDVYELCDEEEGMTYRVELNADNGGVYIKSGEKGHEEGSKNITEDMSIGNKQLSIVVARRILELYGELE |
Ga0334977_0002072_3425_3628 | F053262 | AGGAG | MTKLTQEQRQTIEDALNSIPEVARKGMYGTMEGIEEQLARGDKLIFYMRPNELGGFNIDKMKVGEDD |
Ga0334977_0002072_6847_7059 | F063620 | N/A | MTNHIIPKVAYIPLEYHMSVEDFLEVWKDMEMEEEPTQEDYDTFILERGKSYFYDMRGEIEDNIRLIEDN |
Ga0334977_0002072_7061_7279 | F008402 | GAGG | MTIEITNQVRIQEHSDYWYTAEDTHLDVGCEGFTVSYWEFDKEKGDKRVQHICMNKEEALAIADAIYKLFKN |
Ga0334977_0002072_7897_8052 | F013514 | GAGG | MLTIEELQKYLDDNNITFEEWMRANMITDEDRKYFDKIWVDAIYKNLGKDT |
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