NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334977_0002072

Scaffold Ga0334977_0002072


Overview

Basic Information
Taxon OID3300033978 Open in IMG/M
Scaffold IDGa0334977_0002072 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11667
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (71.11%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007265Metagenome / Metatranscriptome354Y
F008402Metagenome / Metatranscriptome334Y
F013514Metagenome / Metatranscriptome270Y
F014121Metagenome / Metatranscriptome265Y
F032252Metagenome / Metatranscriptome180Y
F053262Metagenome / Metatranscriptome141Y
F063620Metagenome / Metatranscriptome129N
F090316Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0334977_0002072_10402_10569F032252GGAGGMKLYRYKKDGHLYTLYEQLRPFYNLVAVPYFPNQGILVKSKRSISMNDFIVVAER
Ga0334977_0002072_10566_10772F014121GGAGMTDTAYKVWEAFKAELIVEPTDDMKQALASSIRVISSIIHRDGVLANEPWLTHTAQELNEISYDVEAL
Ga0334977_0002072_11196_11327F090316GAGGMPDDLQREEEIFLKALEEHKEKKSQEPTDKTTNTLPAVIAAVL
Ga0334977_0002072_2802_3065F007265GAGMTFQPYNIVPGTEILHSLTDVYELCDEEEGMTYRVELNADNGGVYIKSGEKGHEEGSKNITEDMSIGNKQLSIVVARRILELYGELE
Ga0334977_0002072_3425_3628F053262AGGAGMTKLTQEQRQTIEDALNSIPEVARKGMYGTMEGIEEQLARGDKLIFYMRPNELGGFNIDKMKVGEDD
Ga0334977_0002072_6847_7059F063620N/AMTNHIIPKVAYIPLEYHMSVEDFLEVWKDMEMEEEPTQEDYDTFILERGKSYFYDMRGEIEDNIRLIEDN
Ga0334977_0002072_7061_7279F008402GAGGMTIEITNQVRIQEHSDYWYTAEDTHLDVGCEGFTVSYWEFDKEKGDKRVQHICMNKEEALAIADAIYKLFKN
Ga0334977_0002072_7897_8052F013514GAGGMLTIEELQKYLDDNNITFEEWMRANMITDEDRKYFDKIWVDAIYKNLGKDT

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