Scaffold Ga0334977_0001049

Overview

Basic Information

• Taxon OID: 3300033978
• Scaffold ID: Ga0334977_0001049
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16082
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (63.24%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030410	Metagenome / Metatranscriptome	185	Y
F088766	Metagenome / Metatranscriptome	109	Y
F092043	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0001049_4656_4889	F030410	AGG	MKVGDIVKSLDFNGISDCYLIGKVVAIHSDDTFRAKVIERVWQGSVNKKFKSDYFTAPLQGTCFTDSDESPRIIVVA
Ga0334977_0001049_6135_6347	F088766	GAGG	MINIVTPKKLYYVLLYKPRTFPDGGWSNFIATPHLGRARYYAKKLKRQHRQIDVRVRGKRKAYVLKGSWL
Ga0334977_0001049_7611_7736	F092043	GGA	MPWYKNLLYILIAPFIIGAWCIMNPRKVWEQAKKDFGINNE