NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0314861_0000032

Scaffold Ga0314861_0000032


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0000032 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)220280
Total Scaffold Genes198 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)127 (64.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000138Metagenome / Metatranscriptome1954Y
F000883Metagenome / Metatranscriptome849Y
F001329Metagenome / Metatranscriptome721Y
F002831Metagenome / Metatranscriptome527Y
F040248Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0000032_146544_146699F002831N/AVPAPQRQDDSSTKHHRHAVYASETTGLLLIAFLLLVLTLLRYWHDIHWSLR
Ga0314861_0000032_169589_169789F000883AGGAGMSGEVVLYFDDQADALRFALAAGSVMAGEGGKFASELLEEITRATRIRLDAVIAGNAKVPNSGRAA
Ga0314861_0000032_49608_49769F040248AGGAMNDFSSDTPCAPTVKKPYEKPSFRYEQVFVTTALTCGKQAGTQGDCLLNPKNS
Ga0314861_0000032_88174_88305F001329AGGAMSQNHYSTKPRRRAKSGKRKDPSAATMAKLRQLAAAEAKRSAK
Ga0314861_0000032_97440_98126F000138AGGAGMHMQLVNSFRLPFTTLVSYIPVIATVVTTFFSIILARATLRYVEATDKGLALAREEFEREWSPDLHIKIERVSATEAKVIVTNLAKTSVLLQLLQLRKLSHAMPFERCRLNDPLVGGTTWTQEMGRRIIACTGHEFEGPIAASVTFYAAGRMYRTDWFRSQIQVREGRIVSLEPSNMPTRRVRAVERKGPERRREFVQDVTADVAPPKANSESDSDSRADEKFFVTGA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.