Scaffold Ga0314861

Basic Information
Taxon OID	3300033977 Open in IMG/M
Scaffold ID	Ga0314861_0000009 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033977 Open in IMG/M

Scaffold ID

Ga0314861_0000009 Open in IMG/M

Source Dataset Name

Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	374132
Total Scaffold Genes	324 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	245 (75.62%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

374132

Total Scaffold Genes

324 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

245 (75.62%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-4.0712	Long. (^o)	-73.2029	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Peru: Loreto

Coordinates

Lat. (^o)

-4.0712

Long. (^o)

-73.2029

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010144	Metagenome / Metatranscriptome	307	Y
F028063	Metagenome / Metatranscriptome	192	Y
F072979	Metagenome / Metatranscriptome	120	Y
F088262	Metagenome / Metatranscriptome	109	Y
F094768	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000009_131779_132099	F010144	AGGGGG	MLGYLSFVFGHAWTWLADAVGALYAGMVLMRHRTDGPHYRLSFDPRHPARSVLDLAVWLGMKFLQACLWFGRAFLNMLLEASAEVGEWLMRRSPTVEESIRSRFLV
Ga0314861_0000009_202011_202526	F094768	GGA	VAAIALLVLALIVLVSGIAIWTGLKFLTHNLHLQVEQRGSSHKEVSINTPVGSIEVHHEVDEDSLGLPIYPGAIRVKDKDSATVDLGFGGEVGVHVQVVKYETPDSLESVKAFYKEHLGSEVSKISVHGLGGKTTIEIKTGDQEKVVELEGAGNKTRIKLVRVSFGEHESN
Ga0314861_0000009_204002_204256	F088262	AGGAG	MATPTTVYIDPTQRRRLFQRARRRKTSFSEELRAALDFYLDLPPAFDAEAFAALVREANASMDRSIAKLDETLTFLEKFREAKA
Ga0314861_0000009_259536_259715	F072979	GGAG	MNKGRFLNQKLGKRASRKMALLKSSLATSRPPVGSKASVARFPKKGASREKGPTTGLVI
Ga0314861_0000009_302339_302764	F028063	GAGG	MAIQFALLASLAAFYFLYLPYRSKSQAAAEAQEREPKIEEFFQSLVVEDTRGEVELPGTGGTAHPQRLNRLPAVDEVVQSLGLPNRRTTDFQGGLHITWTGTAHSLEASFVHGRLYCLRREDLRTGHGALVFESSAAWHPF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0314861_0000009

Overview

Ecosystem & Geography

Associated Families

Sequences