Scaffold Ga0334850_000288

Overview

Basic Information

• Taxon OID: 3300033828
• Scaffold ID: Ga0334850_000288
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 715 P1 1-5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29018
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3534
  • Long. (^o): 19.0471
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000269	Metagenome / Metatranscriptome	1410	Y
F000323	Metagenome / Metatranscriptome	1300	Y
F080253	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334850_000288_25673_26032	F000323	GAGG	MRSWCVVLLFSVGSLLAQDSSPSPRNSKDSKGQVTVQGCVSRSTGDYILIKQDPGMTYELQATGKIKFHRYLGQRVEVIGTESPSMSTSSDAMARMGSPSSVTLTITSIKTIEKECPAR
Ga0334850_000288_26051_26662	F000269	GGAG	MSLFLSLALSLLCALTATANASDQPAPKPTDVPATVIAHLPLPQATGSQMLLQKENARQYLYVQQSAKQGFMIVDVSKPEDPVLLKRTAESNQATSGNLQIVSPDVAIAEAPEKTAATLTSANHTTETVRVLDLSDPRNPKTLETFNKVTSLLPDSRHGLIYLTNNEGLWILRYSRPAPLEPAKKKPPCDSNSEIMAMPPDCD
Ga0334850_000288_28894_29016	F080253	N/A	PNYWVKYVVNVGIDQLKQPSLIGAEPQNYFVVLQRLQFRF