Scaffold Ga0373875_005205

Overview

Basic Information

• Taxon OID: 3300033817
• Scaffold ID: Ga0373875_005205
• Source Dataset Name: Laboratory-enriched microbial communities from a contaminated site in Ontario, Canada - KB1_TCB MSP
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3048
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioremediation → Persistent Organic Pollutants (Pop) → Unclassified → Unclassified → Anaerobic Enrichment Culture → Metagenomes From 1,2,4-Trichlorobenzene Dechlorinating Enrichment Cultures

Source Dataset Sampling Location

• Location Name: University of Toronto, Ontario, Canada
• Coordinates
  • Lat. (^o): 43.65699737
  • Long. (^o): -79.3957

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021528	Metagenome / Metatranscriptome	218	N
F069750	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0373875_005205_1055_2293	F021528	GGAG	MSSPSLGSLNEKEASEQELLNLFLFCGNSIIQRFKRVESFRVKQETKLLMYNKAVLLQELQHRELNMIDTLKLMLNDFEISSDSEVRVQPASYELGTGTKVEYPLFYTHEKGSQFGSKAYLNSDTWNFTLKPIAGGAGVGAFLQLSIPKNYYGNNFYSVGEQGTKATLSKVEGELKEKGVHASLSEADMSRVDTFKNIEPEEPFSSYYTLFSLLKARRAIQRGYGTTFLLSNTQQEFCVYDKLEEMRERSIDTTGYPSTMRFEHRLLNKAKVQSTYGFTKVADIFKGGYEVIREKQVESWKNSLFSFTAEELVLIGSKQLEQEMKRFKDEAPINWFSRFLKAYGAYYLASYAGKDVVIEALKNLEAERTMVWRAVKKFEVAERELLVLKQEEGSSKTLGTLYEELRRKVCLN
Ga0373875_005205_233_478	F069750	GAGG	LIVGEYPLQENSFFVEGEKFLIRERKKEKGKKTKYYLCRLQPFRYVSSLFPTGEEESYTFDFEQKLYRLERREHSVTLKFV