Scaffold Ga0373875_001897

Overview

Basic Information

• Taxon OID: 3300033817
• Scaffold ID: Ga0373875_001897
• Source Dataset Name: Laboratory-enriched microbial communities from a contaminated site in Ontario, Canada - KB1_TCB MSP
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7951
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioremediation → Persistent Organic Pollutants (Pop) → Unclassified → Unclassified → Anaerobic Enrichment Culture → Metagenomes From 1,2,4-Trichlorobenzene Dechlorinating Enrichment Cultures

Source Dataset Sampling Location

• Location Name: University of Toronto, Ontario, Canada
• Coordinates
  • Lat. (^o): 43.65699737
  • Long. (^o): -79.3957

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001564	Metagenome / Metatranscriptome	670	Y
F011110	Metagenome / Metatranscriptome	295	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0373875_001897_2340_2582	F001564	GAG	LCPEAPQGGRCDHCPQDKLDAAQASEGGLLIRRALDLRAALNLGIHIGLDDIRADEFYTMLILEEERDQLERERASTHGK
Ga0373875_001897_4320_4460	F011110	N/A	MKPPFGVGDPKEVDATPDVLTPLMVAGWNQCDPPADSEEVTTNVHD