Scaffold Ga0373875

Basic Information
Taxon OID	3300033817 Open in IMG/M
Scaffold ID	Ga0373875_000898 Open in IMG/M
Source Dataset Name	Laboratory-enriched microbial communities from a contaminated site in Ontario, Canada - KB1_TCB MSP
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033817 Open in IMG/M

Scaffold ID

Ga0373875_000898 Open in IMG/M

Source Dataset Name

Laboratory-enriched microbial communities from a contaminated site in Ontario, Canada - KB1_TCB MSP

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19443
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (52.94%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

19443

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (52.94%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Engineered → Bioremediation → Persistent Organic Pollutants (Pop) → Unclassified → Unclassified → Anaerobic Enrichment Culture → Metagenomes From 1,2,4-Trichlorobenzene Dechlorinating Enrichment Cultures

Source Dataset Ecosystem

Engineered → Bioremediation → Persistent Organic Pollutants (Pop) → Unclassified → Unclassified → Anaerobic Enrichment Culture → Metagenomes From 1,2,4-Trichlorobenzene Dechlorinating Enrichment Cultures

Source Dataset Sampling Location
Location Name	University of Toronto, Ontario, Canada
Coordinates	Lat. (^o)	43.65699737	Long. (^o)	-79.3957	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

University of Toronto, Ontario, Canada

Coordinates

Lat. (^o)

43.65699737

Long. (^o)

-79.3957

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000335	Metagenome / Metatranscriptome	1276	Y
F000451	Metagenome / Metatranscriptome	1124	Y
F002448	Metagenome / Metatranscriptome	558	Y
F007212	Metagenome / Metatranscriptome	355	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0373875_000898_12896_13423	F000451	AGGA	MPRFQTVIRRARFIYSPYTAYEMQGFAQVLADAIRARIQSGQNIYDQAAAPLKPGKPGRRGYPDYKSARGLQPIRDWTWSGHTLRCLKVLTANENRTVIGFLDEAMSGRKQTASQIAFYNNQREHQWGVSPRDRAALLAVMLNYRPLVVAAGGTELAGFRQYGAAVYFSALRPAA
Ga0373875_000898_16775_17272	F002448	N/A	MISPKTLLGEWVTALQALPNLLQALGGNANHIQFYSENAVVFGKPTQNNIRLAILSMPPGSILVAWQGTAPGRLGNMLVFVHDFSLYLRAPEEADVGYEDLFNWIVNDIPAGGTLRMLHTQVDPNCEPMDFYLPSARRNTIVISGDGATFEYFEIPVRLIESYNP
Ga0373875_000898_17259_17600	F007212	N/A	MSDWSALAIDVNAIMQQAFGEPVVYQPVQGGFAVGYPLTITAIRHTRERAESGTAASAEEISINPANLPNFPQPGDWVTAWGVQFVVGPVRQPDAYGMAQLSLVARQSPDDQP
Ga0373875_000898_8607_9023	F000335	GAG	MPGNLQQAAPNGVMPLSLCTAFTELREYLQLQNQYHDGTIHRSQLAQTSRRTFRLSKRLSTSQLAVLYNFWVSQNAGLTPFAFYNPFDVLAGQQIGSNYDSTGNNTVGRVTVVFRGNWAQATDLARSNVQGLELVEVV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0373875_000898

Overview

Ecosystem & Geography

Associated Families

Sequences