Scaffold Ga0334980_0260727

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334980_0260727

Scaffold Ga0334980_0260727

Overview

Basic Information
Taxon OID	3300033816 Open in IMG/M
Scaffold ID	Ga0334980_0260727 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	681
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020851	Metagenome / Metatranscriptome	221	Y
F037701	Metagenome / Metatranscriptome	167	Y
F054581	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0260727_3_161	F054581	N/A	ILYGYLNPKYVDMHKQGLVFLISTTYHTKNDPISYCKKCEESFYIKLDYKFT
Ga0334980_0260727_346_471	F020851	N/A	MSEDIVDLAISMAEIDTGMQLPLEEREAMKQRILARLENLN
Ga0334980_0260727_486_632	F037701	AGGA	MIKSKEWRVSNRVWLGVGFAPRRIGLGFSVDRFNANIDFLWFWVSLEY

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