Scaffold Ga0334980_0021208

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0021208
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2788
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028146	Metagenome	192	N
F081254	Metagenome	114	N
F085379	Metagenome	111	N
F104765	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0021208_1216_1512	F028146	N/A	METTHEIKKAAVIAAASEQVRALLETHYDAMRKAAEESFVDDDTQAEPKAKASFTIEWDALAMAPTVTVKVGWSVRFKDESEAVVDPLQAKLEIGGAE
Ga0334980_0021208_2440_2628	F104765	AGGAGG	MNALEIFALGAIMLCAGISLGFLWGLRNGERIGRDREWMDSFFRNIKRDAERRDKAGRFKKR
Ga0334980_0021208_2625_2786	F085379	GGAGG	MSARANPKSEVIDEMVARFAPFKEILAVVRMQQAAVRQRIYNRGYRREYITHEE
Ga0334980_0021208_83_493	F081254	AGGA	MTDQLGQEIIAELRAIRALLATKPAAPVAASAPAPAGAPKDIPQPSELVSDPGSVEVHFGKNSGKPLRSLGAKSVEWYAQEPEPRIGNNGKPFPPRAEDVRLRNAARQIVHGNRGTLAAGSKVTLVTETLTEEVPF