Scaffold Ga0334980_0017698

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0017698
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3069
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017818	Metagenome / Metatranscriptome	238	Y
F018913	Metagenome / Metatranscriptome	232	Y
F063620	Metagenome / Metatranscriptome	129	N
F090316	Metagenome / Metatranscriptome	108	N
F099191	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0017698_105_329	F018913	AGCAG	MTNQERAEELLKVICKSEAHNTAWMLQEVLQHLRKQLSGTNKIDFTDELDVMFNAGWDECLKEIDAICDELELL
Ga0334980_0017698_2654_2893	F017818	N/A	MNKDAYYDWIDENDSYPEHSHKWIVGLYNKYEGVEALHRYFGTFDTREEAKVFAADYKDKYTKSGFISSVRVFPLCEVL
Ga0334980_0017698_326_457	F090316	GAGG	MPDDLQRQEEILLKALEEYKEKKSQEPTDKTTNTLPAVIAAVL
Ga0334980_0017698_598_810	F063620	GGA	MNNHIIPKVAYIPLEYHMSVEDFLEVWEDMEMEDEPTQEDYDTFILDRGKSYFYDMRGEIENNIRLIEDN
Ga0334980_0017698_989_1219	F099191	GAGG	MKRNNFDFMDALIVLVAGGAVLVLLAAPITGVMKVMTTQQALNEQCGTHYNFFQVATAGDNLSRLCQIKNQTVTIK