Scaffold Ga0334980_0016339

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0016339
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3195
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025688	Metagenome / Metatranscriptome	200	Y
F041765	Metagenome / Metatranscriptome	159	Y
F053245	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0016339_2545_2733	F041765	N/A	MSNHKKMIEDSAAFFNKEVDKVILKVTTAKTEKTRSKYLKQLMALKNRLRLEVKMIDELGNF
Ga0334980_0016339_388_561	F053245	N/A	MKLVTIKIGDEDIKDLKEIFKNESDFKPQVRQDMLIVEILRQVLNNPKTEIVEEINL
Ga0334980_0016339_74_391	F025688	AGAAG	MKFILNVEGTNNGGKFLESYAGQEVNIDSLYKDIDVNSPPLATLRTSDNKQHSIQLIDIRFINEFIFINCFVIQHDDKHGGKALLRLKPVSDLAEIISPSTNTRV