NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0006339

Scaffold Ga0334980_0006339


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0006339 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5263
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (29.41%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024529Metagenome / Metatranscriptome205Y
F058099Metagenome / Metatranscriptome135Y
F095381Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0006339_1859_2005F058099GGAGGMTKQLLISQLRQGKDGNDILSILDALCSGMDSSESRQDNVPTLDEIQF
Ga0334980_0006339_2648_3109F095381N/AMTTIQVVINGNQVQGQIDEIAKILGMVSNTMQKPVSSTVEEELLPFNKFAIKELTPHLGEELAAQVVGKLEKCAKQYHPDFRNFIGMYNKVGSIEQRQLLKTLSAVYRFKFGRYTNDAAKYSLKSEIKYATICPHCGAIANAFVVRLTQEGLW
Ga0334980_0006339_4109_4408F024529N/AMFTTLTDRKAFGATYQWAILSLLPMDDGSGCTDQDGMRPTDINEALGMPNEARTALSLVLKRMAAQGLIKRHELGPRWVEYTRLLPLRKRERIARWIQG
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