Scaffold Ga0334980_0000111

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0000111
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39255
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049497	Metagenome / Metatranscriptome	146	Y
F097345	Metagenome / Metatranscriptome	104	Y
F105172	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0000111_14887_15285	F049497	GGA	VTTNNKDFVVKQGLKVATGVTFPDNSVQTTAFTGSAITVGSTFPVSPSNGAMHLDTNTNRIYYYYSSTWYAMANYDDTASVTDHNHNADGFVQDVYTYQGNGPVGPWLGTSLDGGSPATTSFTMTIDGGAAA
Ga0334980_0000111_2_508	F097345	N/A	MENINVTAFPPTFVNHYVVGQLQRFGILSGTEQMVPIFPTSPTNIEDVFRNYIAAPGVSDPLLIQYERLIRFRPSPFYRHKREQLVYYLYCTNLSKITDAHRIITDALDREDSAAQDINAWCSDPVTGIEPYNVYFHNLKVYQADETRDVLELASARTVYANKLIIEYD
Ga0334980_0000111_32603_32740	F105172	AGG	MTIELNDYGFVFDTYVCYIALSWQFLAPATIALIAYKIYKRKKAK