Scaffold Ga0364924_001333

Overview

Basic Information

• Taxon OID: 3300033811
• Scaffold ID: Ga0364924_001333
• Source Dataset Name: Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4034
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9229
  • Long. (^o): -106.9499

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070278	Metagenome / Metatranscriptome	123	Y
F088601	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0364924_001333_2490_2768	F070278	N/A	MRFRDLDGSGSGDIDVLIFVVACTRLDRYEELLWQFGGWSDVRVVLDRRGGERREPHDAFAGVERRRVERRHRLEPSLRKLGWAVVDTDELI
Ga0364924_001333_2889_3314	F088601	GGAG	MVVLLVLIVAQVAPSHTFAANSTSQVVSQQRISGRLRVVLSINSKTTQRQVHLVGHGSSAYPTVDVTCDGKRWTLPLTRSEFAKNGTTATYAVPEDRAERMLKAVECRLLIPGQDIALARQQLRAWASPSQGTTHQREARK