Metagenome / Metatranscriptome Family F070278

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070278
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	79 residues
Representative Sequence	VLLFVVARSRLDRFEELRRHFEDWRDVRVVLDRREGERREPHDAFAGVERRRAERRHRLEPSLRKLGWAVVDTDELIS
Number of Associated Samples	97
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	68.29 %
% of genes near scaffold ends (potentially truncated)	21.14 %
% of genes from short scaffolds (< 2000 bps)	83.74 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.122 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (23.577 % of family members)
Environment Ontology (ENVO)	Unclassified (29.268 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (42.276 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.58% β-sheet: 14.15% Coil/Unstructured: 62.26%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF07366	SnoaL	5.69
PF00355	Rieske	5.69
PF01165	Ribosomal_S21	4.88
PF04392	ABC_sub_bind	4.88
PF00072	Response_reg	4.07
PF00076	RRM_1	3.25
PF03729	DUF308	2.44
PF13646	HEAT_2	1.63
PF00005	ABC_tran	1.63
PF13185	GAF_2	1.63
PF00144	Beta-lactamase	0.81
PF01638	HxlR	0.81
PF12773	DZR	0.81
PF00158	Sigma54_activat	0.81
PF00296	Bac_luciferase	0.81
PF14534	DUF4440	0.81
PF04250	DUF429	0.81
PF13683	rve_3	0.81
PF08797	HIRAN	0.81
PF00459	Inositol_P	0.81
PF04020	Phage_holin_4_2	0.81
PF01702	TGT	0.81
PF11249	DUF3047	0.81
PF08309	LVIVD	0.81
PF02771	Acyl-CoA_dh_N	0.81
PF14659	Phage_int_SAM_3	0.81
PF01042	Ribonuc_L-PSP	0.81
PF13474	SnoaL_3	0.81
PF00775	Dioxygenase_C	0.81
PF01145	Band_7	0.81
PF10634	Iron_transport	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	4.88
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	4.88
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	2.44
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.81
COG0343	Queuine/archaeosine tRNA-ribosyltransferase	Translation, ribosomal structure and biogenesis [J]	0.81
COG1549	Archaeosine tRNA-ribosyltransferase, contains uracil-DNA-glycosylase and PUA domains	Translation, ribosomal structure and biogenesis [J]	0.81
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.81
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.81
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.81
COG1950	Uncharacterized membrane protein YvlD, DUF360 family	Function unknown [S]	0.81
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.81
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.81
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.81
COG2410	Predicted nuclease (RNAse H fold)	General function prediction only [R]	0.81
COG3485	Protocatechuate 3,4-dioxygenase beta subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.81
COG5276	Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain	Function unknown [S]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.12 %
Unclassified	root	N/A	4.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.12 %
Unclassified	root	N/A	4.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.12 %
Unclassified	root	N/A	4.88 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	57.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.50 %
Unclassified	root	N/A	4.88 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.81 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	57.72 %
Unclassified	root	N/A	4.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.25 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.81 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	57.72 %
Unclassified	root	N/A	4.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.25 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.81 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	56.91 %
Unclassified	root	N/A	4.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.25 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.81 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	56.91 %
Unclassified	root	N/A	4.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.25 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.81 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	56.91 %
Unclassified	root	N/A	4.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.25 %
unclassified Nitrospira	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira	0.81 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	56.91 %
Unclassified	root	N/A	4.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.25 %
Nitrospira sp. KM1	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp. KM1	0.81 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_10159128	Not Available	838	Open in IMG/M
3300000550\|F24TB_11149743	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	668	Open in IMG/M
3300000550\|F24TB_12783775	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	516	Open in IMG/M
3300001431\|F14TB_100020186	All Organisms → cellular organisms → Bacteria	1990	Open in IMG/M
3300004114\|Ga0062593_102937249	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	545	Open in IMG/M
3300005171\|Ga0066677_10609995	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	618	Open in IMG/M
3300005181\|Ga0066678_10090929	All Organisms → cellular organisms → Bacteria	1829	Open in IMG/M
3300005181\|Ga0066678_10362758	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	957	Open in IMG/M
3300005289\|Ga0065704_10363541	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	794	Open in IMG/M
3300005289\|Ga0065704_10371718	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300005294\|Ga0065705_10257133	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300005294\|Ga0065705_11191295	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	503	Open in IMG/M
3300005445\|Ga0070708_101197447	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	711	Open in IMG/M
3300005446\|Ga0066686_10181639	All Organisms → cellular organisms → Bacteria	1403	Open in IMG/M
3300005446\|Ga0066686_10244450	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300005446\|Ga0066686_10880741	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300005447\|Ga0066689_10005897	All Organisms → cellular organisms → Bacteria	5199	Open in IMG/M
3300005467\|Ga0070706_100092096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2812	Open in IMG/M
3300005467\|Ga0070706_100511974	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1116	Open in IMG/M
3300005518\|Ga0070699_101422975	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	636	Open in IMG/M
3300005526\|Ga0073909_10399620	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	647	Open in IMG/M
3300005557\|Ga0066704_10369500	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300005558\|Ga0066698_10375144	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	981	Open in IMG/M
3300005561\|Ga0066699_10865921	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	632	Open in IMG/M
3300005598\|Ga0066706_11270341	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	557	Open in IMG/M
3300005713\|Ga0066905_100089532	All Organisms → cellular organisms → Bacteria → Proteobacteria	2052	Open in IMG/M
3300005719\|Ga0068861_100206987	All Organisms → cellular organisms → Bacteria → Proteobacteria	1650	Open in IMG/M
3300006196\|Ga0075422_10485033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	559	Open in IMG/M
3300006800\|Ga0066660_11402047	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	548	Open in IMG/M
3300006844\|Ga0075428_101283251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	770	Open in IMG/M
3300006845\|Ga0075421_101991142	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	619	Open in IMG/M
3300006846\|Ga0075430_101084684	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp. KM1	659	Open in IMG/M
3300006854\|Ga0075425_100778848	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1097	Open in IMG/M
3300007258\|Ga0099793_10334687	Not Available	738	Open in IMG/M
3300007265\|Ga0099794_10135903	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1243	Open in IMG/M
3300007265\|Ga0099794_10302170	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300009012\|Ga0066710_103302039	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	616	Open in IMG/M
3300009038\|Ga0099829_11303340	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	600	Open in IMG/M
3300009088\|Ga0099830_10703439	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300009089\|Ga0099828_10256485	All Organisms → cellular organisms → Bacteria	1569	Open in IMG/M
3300009089\|Ga0099828_10343179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1345	Open in IMG/M
3300009100\|Ga0075418_11092564	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	864	Open in IMG/M
3300009100\|Ga0075418_12539842	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	559	Open in IMG/M
3300009147\|Ga0114129_10076285	All Organisms → cellular organisms → Bacteria	4667	Open in IMG/M
3300009156\|Ga0111538_11419485	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	876	Open in IMG/M
3300009162\|Ga0075423_13118912	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	508	Open in IMG/M
3300009610\|Ga0105340_1106842	Not Available	1128	Open in IMG/M
3300009795\|Ga0105059_1063130	Not Available	519	Open in IMG/M
3300009807\|Ga0105061_1070390	Not Available	567	Open in IMG/M
3300009813\|Ga0105057_1080713	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	577	Open in IMG/M
3300009816\|Ga0105076_1058939	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	704	Open in IMG/M
3300009817\|Ga0105062_1139435	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	502	Open in IMG/M
3300009836\|Ga0105068_1120397	Not Available	525	Open in IMG/M
3300010132\|Ga0127455_1138533	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300010304\|Ga0134088_10448349	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	632	Open in IMG/M
3300010335\|Ga0134063_10492623	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	612	Open in IMG/M
3300010336\|Ga0134071_10046525	All Organisms → cellular organisms → Bacteria	1955	Open in IMG/M
3300010336\|Ga0134071_10109948	All Organisms → cellular organisms → Bacteria → Proteobacteria	1316	Open in IMG/M
3300010336\|Ga0134071_10728091	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	526	Open in IMG/M
3300011270\|Ga0137391_10131756	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2174	Open in IMG/M
3300012096\|Ga0137389_10061308	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2877	Open in IMG/M
3300012189\|Ga0137388_10486356	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1146	Open in IMG/M
3300012200\|Ga0137382_10668024	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	744	Open in IMG/M
3300012203\|Ga0137399_10346423	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1233	Open in IMG/M
3300012205\|Ga0137362_10003528	All Organisms → cellular organisms → Bacteria	10475	Open in IMG/M
3300012205\|Ga0137362_10013475	All Organisms → cellular organisms → Bacteria	6087	Open in IMG/M
3300012205\|Ga0137362_10196561	All Organisms → cellular organisms → Bacteria	1735	Open in IMG/M
3300012206\|Ga0137380_10218441	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1724	Open in IMG/M
3300012206\|Ga0137380_10398572	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1222	Open in IMG/M
3300012207\|Ga0137381_11279897	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	626	Open in IMG/M
3300012210\|Ga0137378_10897486	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	799	Open in IMG/M
3300012211\|Ga0137377_10008070	All Organisms → cellular organisms → Bacteria	8653	Open in IMG/M
3300012350\|Ga0137372_10223040	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1496	Open in IMG/M
3300012351\|Ga0137386_11198367	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	531	Open in IMG/M
3300012357\|Ga0137384_10350365	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1223	Open in IMG/M
3300012410\|Ga0134060_1303878	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300012927\|Ga0137416_11161204	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300012930\|Ga0137407_10001407	All Organisms → cellular organisms → Bacteria	15672	Open in IMG/M
3300012930\|Ga0137407_10101065	All Organisms → cellular organisms → Bacteria	2472	Open in IMG/M
3300012944\|Ga0137410_10561674	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300012972\|Ga0134077_10307575	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	667	Open in IMG/M
3300012976\|Ga0134076_10112122	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1091	Open in IMG/M
3300014154\|Ga0134075_10386420	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	617	Open in IMG/M
3300015359\|Ga0134085_10320135	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	685	Open in IMG/M
3300018078\|Ga0184612_10026518	All Organisms → cellular organisms → Bacteria	2988	Open in IMG/M
3300018468\|Ga0066662_12799804	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	517	Open in IMG/M
3300020170\|Ga0179594_10097378	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1054	Open in IMG/M
3300025910\|Ga0207684_10034944	All Organisms → cellular organisms → Bacteria	4269	Open in IMG/M
3300025910\|Ga0207684_10038054	All Organisms → cellular organisms → Bacteria	4082	Open in IMG/M
3300025910\|Ga0207684_10296034	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1395	Open in IMG/M
3300026497\|Ga0257164_1039198	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	736	Open in IMG/M
3300026524\|Ga0209690_1141131	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	904	Open in IMG/M
3300026524\|Ga0209690_1195857	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	648	Open in IMG/M
3300026536\|Ga0209058_1009722	All Organisms → cellular organisms → Bacteria	6932	Open in IMG/M
3300026537\|Ga0209157_1153525	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1030	Open in IMG/M
3300026537\|Ga0209157_1294787	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	597	Open in IMG/M
3300026540\|Ga0209376_1412950	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	504	Open in IMG/M
3300026552\|Ga0209577_10325922	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1139	Open in IMG/M
3300027511\|Ga0209843_1035486	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	910	Open in IMG/M
3300027533\|Ga0208185_1113465	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	633	Open in IMG/M
3300027748\|Ga0209689_1131225	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1244	Open in IMG/M
3300027875\|Ga0209283_10237130	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1210	Open in IMG/M
3300027909\|Ga0209382_10026131	All Organisms → cellular organisms → Bacteria	7058	Open in IMG/M
3300027961\|Ga0209853_1003073	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	5087	Open in IMG/M
3300027961\|Ga0209853_1066879	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	961	Open in IMG/M
3300031170\|Ga0307498_10212755	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300031184\|Ga0307499_10199485	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	615	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1083402	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	774	Open in IMG/M
3300031562\|Ga0310886_10482078	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300031720\|Ga0307469_10043113	All Organisms → cellular organisms → Bacteria	2762	Open in IMG/M
3300031740\|Ga0307468_100007539	All Organisms → cellular organisms → Bacteria	3985	Open in IMG/M
3300031740\|Ga0307468_100677719	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	857	Open in IMG/M
3300031820\|Ga0307473_10324055	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300031820\|Ga0307473_10739430	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	695	Open in IMG/M
3300031858\|Ga0310892_10212800	All Organisms → cellular organisms → Bacteria	1170	Open in IMG/M
3300031943\|Ga0310885_10213186	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300031944\|Ga0310884_10060166	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1738	Open in IMG/M
3300032174\|Ga0307470_11389953	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300032180\|Ga0307471_101114997	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	955	Open in IMG/M
3300032180\|Ga0307471_101483580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	837	Open in IMG/M
3300032180\|Ga0307471_103274247	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	574	Open in IMG/M
3300032205\|Ga0307472_100850128	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	839	Open in IMG/M
3300033811\|Ga0364924_001333	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4034	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.62%
Host-Associated	Host-Associated	11.38%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.18%
Plants	Host-Associated → Plants	11.38%
Aquatic	Environmental → Aquatic	2.44%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.37%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.94%
Sediment	Environmental → Aquatic → Sediment	2.44%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.44%
Floodplain	Environmental → Terrestrial → Floodplain	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.67%
Loam	Environmental → Terrestrial → Soil → Loam	10.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.94%
Sand	Environmental → Terrestrial → Soil → Sand	8.13%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.63%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.81%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.59%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	17.07%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.94%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	8.13%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.69%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	4.06%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.25%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.81%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	23.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	15.45%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	8.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	8.13%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	7.32%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.69%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	4.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.25%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.63%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.63%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.81%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.81%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.81%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009795	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_40_50	Environmental	Open in IMG/M
3300009807	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10	Environmental	Open in IMG/M
3300009813	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_10_20	Environmental	Open in IMG/M
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009836	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20	Environmental	Open in IMG/M
3300010132	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012410	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026497	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027511	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027961	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033811	Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_101591282	3300000550	Soil	MFVVARTRLDRYEELLHFEHWRDARVILDRREGERRTPQPTFAGVDQRRVERRQWRPDLRKLGWFVVDTDDISTQPSSPT*
F24TB_111497432	3300000550	Soil	VLIFVVARTRLDRYEELRLHFEHSRDVTVVLDRREGERRALYGAFSGVDLRRVDRRHGLEPSMSKLGWSVIDTDELIS*
F24TB_127837752	3300000550	Soil	MLIFVVTRSRLDRYEELRHEFGDWRDVRIILDRREGERREPDDTFAGVERRGAERRRRRPDLSKLGWSVVXXDELIS*
F14TB_1000201864	3300001431	Soil	MCHLQVGGRVCYVLMFVVARTRLDRYEELLHFEHWRDARVILDRREGERRTPQPTFAGVDQRRVERRQWRPDLRKL
Ga0062593_1029372492	3300004114	Soil	VAWPALSRDRCARGNVEVLLFVVARNHLDRYEQLRRYFEDWRDVQIVLDRREGERRTPQTTFAGIDQRRVERRYRQPDLRKLGWAVVDTVELDS*
Ga0066677_106099951	3300005171	Soil	VLIFVVARSRLDRYEELRRHFQDWRDVRIVLDRREGERRALHGQFGGVDRRRVERRQPLPGLRTIGWAVVEPSC*
Ga0066678_100909293	3300005181	Soil	MVVRTRLDRLEELRQYFAGWRDVRIVLDRREGERREPHDTCVGVERRRAERRHRLEPSLKKLGWAVVDTDELVS*
Ga0066678_103627582	3300005181	Soil	VVAGPLPGRDRSADGDVGVLLFVVARSRLDLYGELCRHFEDWRDVRIVLDRREGERRTPHDMLARADRRRAERRHQPPDLRKLGWSVVDTDGP*
Ga0065704_103635412	3300005289	Switchgrass Rhizosphere	LDVLLFVVARTRLDRYEELRREFEDWHDVRIILDRREGERRKPHDLPAGVEKRRADRRHQQPDLRKLGWSVVDADESGSGIH*
Ga0065704_103717182	3300005289	Switchgrass Rhizosphere	MLIFVVARFRLDRYEELRRDFGDWRDVTIVLDRREGDRRGPYDTFAGVERRGAERRQRRPDLRKLGWSVVDTDDLIS*
Ga0065705_102571331	3300005294	Switchgrass Rhizosphere	MLIFVVARFRLDRYEELRRDFGDWRDVTIVLDRREGDRRGPYDTFAGVERRGAERRQRRPDLRKLGWSVVDTDDL
Ga0065705_111912951	3300005294	Switchgrass Rhizosphere	MLIFVVARSRLDRYEELRREFDDRHDVRIVLDRREGERRTPAQHAFAGADRRQLERRQWLPNLRKLGWAVGRY*
Ga0070708_1011974472	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MVVRTRLDRLEELRQYFAGWRDVRIVLDRREGERREPHDTCVGVERRRAERRHRLEPSLKKLGWAVVDTNELVS*
Ga0066686_101816392	3300005446	Soil	VLIFVVACTRLDRYEELLWQFGGWSNVKVVLDRRGGERREPRDAFAGVERRRAERRHWLEPSMRKLGWSVVDTDELI*
Ga0066686_102444504	3300005446	Soil	VLIFVVARSRLDRYEELRRHFQDWRDVRIVLDRREGERRALYGQFGGVDRRRVERRQPLPGLRTIGWAVVEPSC*
Ga0066686_108807411	3300005446	Soil	VLIFVVGRTRLDRYEELRLHFKDWRDVRVVLDRREGGRRESHDTVAGVERRRAERRHRLEPSLRKL
Ga0066689_100058973	3300005447	Soil	LLLFMVVRTRLDRLEELRQYFAGWRDVRIVLDRREGERREPHDTCVGVERRRAERRHRLEPSLKKLGWAVVDTDELVS*
Ga0070706_1000920964	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MLIFVVARTRLDRYEELRRQFEDWPDVTIVLDRREGERRTLPRTFSGVDQRRAERRHRLYDQPYLKLGWAVVDTDELLS*
Ga0070706_1005119743	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VLLFVVARSRLDRYEELRRHFEEWRDVRVVLDRREGERRTPAGTFSGADRRRLERRHRLDVEHEMRKLGWCVVDTDNPVS*
Ga0070699_1014229751	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VLIFVVARSRLDRYEELRQQFGDWRDVRIVLDRREGERRTPQHAFAGPDRRRLERRQWLPDLRKLGWSVVDTDELGS*
Ga0073909_103996202	3300005526	Surface Soil	VLLFVVARNHLDRYEQLRRYFEDWRDVQIVLDRREGERRTPQTTFVGVDQRRVERRRQPDLRKLGWAVVDTVELDS*
Ga0066704_103695001	3300005557	Soil	MLLFVVARSRLDRYEELRPAFEGRRNVRIILDRREGERRWPHHTFWGVDRRRAERRHGHNVESYFKLGWAVIDTDELAW*
Ga0066698_103751442	3300005558	Soil	VLLFVVARSRLDRYEELRRHFEDWRHVRIVLDRREGERRAHDTFSGVDRRRVDRRHRLELDPYLKLGWTVVDTDELVS*
Ga0066699_108659211	3300005561	Soil	NRYEELRLHFKDWRDVRVVLDRREWERREPRDTVAGVERRRAERRHRLEPSLRKLGWAVVDTDELIS*
Ga0066706_112703412	3300005598	Soil	VLLFVVARSRLDRYEELRRHFEDWRDVRIVLDRREGERRVPQPTFAGADRRRVERRQRVPDLRKLGWSVFDTDELVS*
Ga0066905_1000895325	3300005713	Tropical Forest Soil	VLIFVVSRRRLDRYEELRRHFEDWRDVRIILDRREGERRSPYGTFTGTERRRVERRQPLMGLRTIGWAVVEWE*
Ga0068861_1002069873	3300005719	Switchgrass Rhizosphere	VLIFVVSRTRLDRYEELRRHFEDWRDVRIVLDRREGDRRVPYGAFTGTDRRRVERRQPLPGLRTIGWAVVESE*
Ga0075422_104850332	3300006196	Populus Rhizosphere	LDVLLFVVARTRLDRYEELRREFEDWHDVRIILDRREGERRKPHDSPAGVEKRRADRRHQQPDLRKLGWSVVDADESGSGIH*
Ga0066660_114020472	3300006800	Soil	VLIFVVGRTRLDRYEELRLHFKDWRDVRVVLDRREWERREPRDTVAGVERRRAERRHRLEPSLRKLGWAVVDTDELIS*
Ga0075428_1012832511	3300006844	Populus Rhizosphere	VLIFVVSRTRLDRYEELRRHFEDWRDVRIVLDRREGDRRAPYGTFSGTDRRRVERRQPLPGLRTIGWAVVEWE*
Ga0075421_1019911422	3300006845	Populus Rhizosphere	CAVMLIFVVARSRLDRYEELRRQFDDRHDVRIVLDRREGERRTPAQHAFAEADRRQLERRQWLPDLRKLGWFVVDPDELVS*
Ga0075430_1010846842	3300006846	Populus Rhizosphere	VLIFVVSRTRLDRYEELRRHFEDWRDVRIVLDRREGDRRAPYGTFSGTDRRRVERRQPLPGLRTIGWAVVE
Ga0075425_1007788484	3300006854	Populus Rhizosphere	LLLFIVARTRLDRFEELRQYFAGWRDVRIVLDRREGERREPHDTCGGVERRRAERRYRLEPSLRKLGWSVVDTDELVS*
Ga0099793_103346872	3300007258	Vadose Zone Soil	VLIFVVACTRLDRYEELLWQFGGWSDVRVVLDRRGGERREPHDAFAGVERRRVERRHRLEPSLRKLGWSVVDTDELI*
Ga0099794_101359033	3300007265	Vadose Zone Soil	VLIFVVACTRLDRYEELLWQFGGWSNVRVVLDRRGGERREPHDAFAGVERRRVERRHRLEPSLRKLGWSVVDTDELI*
Ga0099794_103021701	3300007265	Vadose Zone Soil	LDRYAELRRQFDDWHDVRVVLDRREGERRIPQHTFSSVDRRRVERRHGLDVAPYLKLGWSVVDTDELIS*
Ga0066710_1033020392	3300009012	Grasslands Soil	VLLFVVARTGLDRYEELRRHFEDWRDVRVVLDRREGERRALHDTFSGVDRRRVERRLRLEPSWRKLGWSVVDTDELVS
Ga0099829_113033402	3300009038	Vadose Zone Soil	MTSNDLLARVLLFVVARTSLDRYEELRRHFEDWRDIRIVLDRREGERRAAGHTFSGVDRRRAERRYRLNVEREMSNLGWCVVDTDDPVS*
Ga0099830_107034392	3300009088	Vadose Zone Soil	VAWEVAGGKHVLLFVVARTRLDRYEELRHYFEHWRDARVVLDRREGDRRTPRGSFAGVDRRRVERRSRVSAEPYLKLGWSLVDTANLSREPRRR*
Ga0099828_102564852	3300009089	Vadose Zone Soil	VLLFVVARSRLDRFEELRRHFEDWRDVRVVLDRREGERREPHDAFAGVERRRAERRHRLEPSLRKLGWAVVDTDELIS*
Ga0099828_103431793	3300009089	Vadose Zone Soil	VLLFIVARTRLDRYEELRRHFEDWRDVRIVLDRREGERRAAGHTFSGVDRRRAERRYRLNVEREMSNLGWCVVDTDDPVS*
Ga0075418_110925641	3300009100	Populus Rhizosphere	MLIFVVARSRLDRYEELRQFDDRHDLRIVLDRREGERRTPTQHAFAGADRRQLERRQWLPDLRKLGWFVVDPDELVS*
Ga0075418_125398421	3300009100	Populus Rhizosphere	LDVLLFVVARTRLDRYEELRREFEDWRDVRIILDRREGERRIPQPAFAGVDRRRLERRHRGNGDSYLKLGWDVVDTDSS*
Ga0114129_100762855	3300009147	Populus Rhizosphere	LLLFIVARTRLDRFEELCQYFAGWRDERIVLDRREGERREPLTRVGVERRRAERRHRLEPSLKKLGWAVVDTNELVS*
Ga0111538_114194852	3300009156	Populus Rhizosphere	LLLFIVARTRLDRFEELRQYFAGWRDVRIVLDRREGERREPHDTCVGVERRRAERRHRLEPSLKKLGWAVVDTNELVS*
Ga0075423_131189122	3300009162	Populus Rhizosphere	LDVLLFVVARTRLDRYEELRREFEDWHDVRIVLDRREGERRKPHDLPAGVEKRRADRRHQQPDLTKLGWSVVDTDELVS*
Ga0105340_11068421	3300009610	Soil	MLIFVVARTRLDRYEELRRQFEDWSEVRIVLDRREGERRTIPRTFSGGDRRRAERRHRLYDQPYLKLGWAVVDTDELVS*
Ga0105059_10631301	3300009795	Groundwater Sand	VGGHQSSASGDIDVLIFVVACTRLDRYEELLWQFGGWSNVRVVLDRRGGERREPHVAFAGVERRRVERRQRLEPSLRKLGWSVVDTDEVT*
Ga0105061_10703901	3300009807	Groundwater Sand	QASIQRTGDLDGSGSGDIDVLIFVVACTRLDRYEELLWQFGGWSDVRVVLDRRGGERREPHVAFAGVERRRVERRQRLEPSLRKLGWSVVDTDELI*
Ga0105057_10807131	3300009813	Groundwater Sand	VASPILWRDPSDVLIFLVARTRLDRYEELRRQFEDWRDVRVVLDRREGDRRTTQPTFAGIDRRQVERRQRLPDLRKLGWSVLDTDDL*
Ga0105076_10589391	3300009816	Groundwater Sand	VLIFLVARTRLDRYEELRRQFENWRDVRVVLDRREGDRRTTQPTFAGIDRRQVERRQRLPDLRKLGWSVLDTDDL*
Ga0105062_11394351	3300009817	Groundwater Sand	VLIFVVACTRLDRYEELLWQFGGWSDVRVVLDRRGGERREPHDAFAGVERRRAERRHRLEPSLRKLGWSVVDTDELIS*
Ga0105068_11203971	3300009836	Groundwater Sand	DVLIFVVACSRLDRYEELLWQFGGWSNVRVVLDRRGGERREPHVAFAGVERRRVERRQRLEPSLRKLGWSVVDTDEVT*
Ga0127455_11385334	3300010132	Grasslands Soil	VVARSRLDRYEELRRHFQDWRDVRIVLDHREGERRALQGQFGGADRRRVERRQPLPGLRTIGWAVVEPSC*
Ga0134088_104483492	3300010304	Grasslands Soil	VLIFVVARSRLDRYEELRRHFQDWRDVRIVLDRREGERRALQGQFGGVDRRRVERRQPLPGLRTIGWAVVEPSC*
Ga0134063_104926231	3300010335	Grasslands Soil	KIGRFELGVLIFVVARSRLDRYEELRRHFQDWRDVRIVLDRREGERRALQGQFGGADRRRVERRQPLPGLRTIGWAVVEPSR*
Ga0134071_100465254	3300010336	Grasslands Soil	VGGRVCYVLLFVVARNRLDRYEELRRQFEDWRDVRVVLDRREGERREPHDTFLGADQRRLERRHRLEPYLSKLGWSVVDTDELIS*
Ga0134071_101099481	3300010336	Grasslands Soil	PVGRVERGVLIFVVARSRLDRYEELRRHFEDWRDVRIVLDRREGERRALHGQFGGVDRRRVERRQPLPGLRTIGWAVVEPSC*
Ga0134071_107280911	3300010336	Grasslands Soil	VLLFVVARSRLDRYEELRRHFEDWRHVRIVLDRREGERRAHDTFSGVDRRRVERRQRVPDLRKLGWSVFDTDERVS*
Ga0137391_101317563	3300011270	Vadose Zone Soil	VLIFVVACTRLDRYEELLWQFGGWSNVRVVLDRRGGERREPHDAFAGVEKRRVERRHRLEPSLRKLGWSVVDTDELI*
Ga0137389_100613085	3300012096	Vadose Zone Soil	VLLFIVSRSRLDRYEELRRHFEDWRDVRIVLDRREGERRTPQPTFAGIDQRRVERRHRHPDLRKLGWSVVDTEELDS*
Ga0137388_104863561	3300012189	Vadose Zone Soil	VAWEIAGGKHVLIFVVARTRLDRYEELRQRFEDWRDVRIVLDRREGDRRTPRGSFAGVDRRRVERRSRVSAEPYLKLGWSVVDTDERVS*
Ga0137382_106680241	3300012200	Vadose Zone Soil	VLIFVVGRTRLDRYEELRLHFKDWRDVRVVLDRREGERREPHDTFAGVERRRLERRHRLEPSLRKLGWAVVDTDELIA*
Ga0137399_103464232	3300012203	Vadose Zone Soil	LDRYAELRRQFDDWHDVRVVLDRREGERRIPEHTFSSVDRRRVERRHGLDVAPYLKLGWSVVDTDELIS*
Ga0137362_100035287	3300012205	Vadose Zone Soil	VLIFVVARSRLDRYEELRHHFEDWRDVRVVLDRREGERRALHRAFSGADLRRVERRHGLEPSMSKLGWSVIDTDELIS*
Ga0137362_100134752	3300012205	Vadose Zone Soil	VLTFIVARSRLDRYEELRRHFEDWRDVRIVLDRREGERRTYPDTFAGAERRRVERRQLLPGLRTLGWAVADTR*
Ga0137362_101965613	3300012205	Vadose Zone Soil	VLIFVVARTRLDRYAELRRQFDDWHDVRIVLDRREGERRTGEHTFSSVDRRRIERRHRLDVAPYLKLGWAVVDTDEVVAEAQ*
Ga0137380_102184414	3300012206	Vadose Zone Soil	RCVLRRGNGRPPSVRSADGDLDGSGSGDIDVLIFVVACTRLDRYEELLWQFGGWSDVRVVLDRRGGERREPHDAFAGVERRRAERRHRLEPSLRKLGWSVVDTDELI*
Ga0137380_103985721	3300012206	Vadose Zone Soil	TGDDVAWAIPGGTYMLLFVVARRLDRYEELRRQFEDWRDVRVVLDRREGERREPHDTFAGIERRRVERRHRLEPALRKLGWAVVDTDELVS*
Ga0137381_112798971	3300012207	Vadose Zone Soil	VLIFVVGRTRLDRYEELRLHFEDWRDVEPHDTFAGVVERRRAERRHHLEPSLRKLGWSVVDTDELIS*
Ga0137378_108974862	3300012210	Vadose Zone Soil	VLIFVVGRTRLDRYEELRLHFEDWRDVRVVLDRREGERREPHDTSAGVEGRRLERRHRLEPSLRKLGWAVVDTDELIS*
Ga0137377_100080706	3300012211	Vadose Zone Soil	VLIFVVARSRLDRYEELRRHFQDWRDVRIVLDRREGERRALQGQFGGADRRRVERRQPLPGLRTIGWAVVEPSR*
Ga0137372_102230402	3300012350	Vadose Zone Soil	MLILVVSRSRLDRYEELRHDFGDWRDVRIILDRREGERREPDDTFAAVERRGAERRRRRPDLRKLGWSVVDTDELIS*
Ga0137386_111983671	3300012351	Vadose Zone Soil	DPAHGVSYMLLFVVARSRLDRYEELRRHFEDWRDVRIVLDRREGERRVPQPTFAGADRRRVERRQRVPDLRKLGWSVFDTDELVS*
Ga0137384_103503652	3300012357	Vadose Zone Soil	VLIFVVGRTRLDRYEELRLHFEDWRDVRVVLDRREGERREPHDTSAGVEGRRLERRHRLEPPLRKLGWAVVDTDELIS*
Ga0134060_13038784	3300012410	Grasslands Soil	VLIFVVARSRLDRYEELRRHFQDWRDVRIVLDRREGERRALQGQFGGADRRRVERRQPLPGLRTIGWAVVEPSC*
Ga0137416_111612042	3300012927	Vadose Zone Soil	LDRYAELRRQFDDWRDVRVVLDRREGERRTREHTFSSVDRRRVERRHHLDVAPYLKLGWSVIDTDELIS*
Ga0137407_1000140717	3300012930	Vadose Zone Soil	LTFIVARSRLDRYEELRRHFEDWRDVRIVLDRREGERRTYPDTFAGAERRRVERRQLLPGLRTLGWAVADTR*
Ga0137407_101010653	3300012930	Vadose Zone Soil	VLIFVVARSRLDRYEELRRHFQDWRDVRIVLDRREGERRALQGQFGGADRRRVERRQPLPGLRTIGWAVVEP*
Ga0137410_105616741	3300012944	Vadose Zone Soil	VLIFVVACTRLDRYEELLWQFGGWSNVRVVLDRRGGERREPHDAFAGVERRRAERRHRLEPSLRKLGWSVVDTDELV*
Ga0134077_103075752	3300012972	Grasslands Soil	VLIFVVARSRLNRYEELRQHFADWRDVRVVLDRREGERREPHDTFLGADQRRLERRHRLEPYLSKLGWSVVDTDELIS*
Ga0134076_101121224	3300012976	Grasslands Soil	LSVQRTGDLEGSASRDIDVLIFVVACTRLDRYEELLWQFGGWSNVKVVLDRRGGERREPRDAFAGVERRRAERRHWLEPSMRKLGWSVVDTDELI*
Ga0134075_103864202	3300014154	Grasslands Soil	MCHLQVGGRVRYVLLFVVARNRLDRYEELRRQFEDWRDVRVVLDRREGERREPHDTFAGIERRRVERRHRLEPALRKLGWAVVDTDELVS*
Ga0134085_103201351	3300015359	Grasslands Soil	MCHLQVGGRVCYVLLFVVARNRLDRYEELRRQFEDWRDVRVVLDRREGERREPHETFAGVERRRVERRHRPQPSLRKLGWSVVDTDELIP*
Ga0184612_100265184	3300018078	Groundwater Sediment	VLLFVVARRRLDRYEELRRQFWGWSDVRVVLDRREGERRTPRDTFSGVDRRRVERRHRLNGEPYLKLGWSVVDTDELVS
Ga0066662_127998041	3300018468	Grasslands Soil	VLIFVVGRTRLDRYEELRLHFKDWRDVRVVLDRREGERREPNDTFAGVERRRVERRHPSEPSLTKLGW
Ga0179594_100973781	3300020170	Vadose Zone Soil	VLTFIVARSRLDRYEELRRHFEDWRDVRIVLDRREGERRTYPDTFAGAERRRVERRQLLPGLRTLGWAVADTR
Ga0207684_100349442	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MLIFVVARTRLDRYEELRRQFEDWPDVTIVLDRREGERRTLPRTFSGVDQRRAERRHRLYDQPYLKLGWAVVDTDELLS
Ga0207684_100380549	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VLLFVVARSRLDRYEELRRHFEEWRDVRVVLDRREGERRTPAGTFSGADRRRLERRHRLDVEHEMRKLGWCVVDTDNPVS
Ga0207684_102960341	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MVVRTRLDRLEELRQYFAGWRDVRIVLDRREGERREPHDTCVGVERRRAERRHRLEPSLKKLGWAVVDTNELVS
Ga0257164_10391981	3300026497	Soil	VLIFVVARSRLDRYEELRQQFGDWRDVRIVLDRREGDRRTPQHAFAGADRRRLERRQWLPDLRKLGWSVVDTDELGS
Ga0209690_11411313	3300026524	Soil	MVVRTRLDRLEELRQYFAGWRDVRIVLDRREGERREPHDTCVGVERRRAERRHRLEPSLKKLGWAVVDTDELVS
Ga0209690_11958572	3300026524	Soil	RDRSADGDVGVLLFVVARSRLDLYGELCRHFEDWRDVRIVLDRREGERRTPHDMLARADRPRAERRHRPPDLRKLGWSVVDTDGP
Ga0209058_10097229	3300026536	Soil	VLIFVVACTRLDRYEELLWQFGGWSNVKVVLDRRGGERREPRDAFAGVERRRAERRHWLEPSMRKLGWSVVDTDELI
Ga0209157_11535254	3300026537	Soil	VLIFVVARSRLDRYEELRRHFQDWRDVRIVLDRREGERRALYGQFGGVDRRRVERRQPLPGLRTIGWAVVEPSC
Ga0209157_12947871	3300026537	Soil	VLIFVVGRTRLDRYEELRLHFKDWRDVRVVLDRREGGRRESHDTVAGVERRRAERRHRLEPSLRNLGWAVVDTDELIS
Ga0209376_14129501	3300026540	Soil	NKAVDVLIFVVGRTRLDRYEELRLHFKDWRDVRVVLDRREGGRRESHDTVAGVERRRAERRHRLEPSLRNLGWAVVDTDELIS
Ga0209577_103259221	3300026552	Soil	ANEEVDVLIFVVGRTRLNRYEELRLHFKDWRDVRVVLDRREWERREPRDTVAGVERRRAERRHRLEPSLRKLGWAVVDTDELIS
Ga0209843_10354862	3300027511	Groundwater Sand	VGGHQSSASGDIDVLIFVVACTRLDRYEELLRQFGGWSNVGVVLDSRDGDRREPHDTFAGVDRRRVERRHRLNGEPYLKLGWAVVDTDELIS
Ga0208185_11134652	3300027533	Soil	MLIFVVARTRLDRYEELRRQFEDWSEVRIVLDRREGERRTIPRTFSGGDRRRAERRHRLYDQPYLKLGWAVVDTDELVS
Ga0209689_11312251	3300027748	Soil	VLLFVVARSRLDRYEELRRHFEEWRDVRVVLDRREGARRTPAGTFSGADRRRLERRHRLDVEHEMRKLGWCVVDTDNPVL
Ga0209283_102371303	3300027875	Vadose Zone Soil	MCHLQVGGRVRYVLLFVVARRRLDRYEELRRQFEDWRDVRVVLDRREGERREPHDTFAGVDRRRVERRHRLNGEPYLKLGWSVVDTDEHVS
Ga0209382_100261312	3300027909	Populus Rhizosphere	VLIFVVSRTRLDRYEELRRHFEDWRDVRIVLDRREGDRRAPYGTFSGTDRRRVERRQPLPGLRTIGWAVVEWE
Ga0209853_10030734	3300027961	Groundwater Sand	VLIFVVACTRLDRYEELLWQFGGWSNVRVVLDRRGGERREPHVAFAGVERRRVERRQRLEPSLRKLGWSVVDTDEVT
Ga0209853_10668794	3300027961	Groundwater Sand	VLIFVVGRARLDRYEELRLHFEHWRDVRIVLDHREGERREPHDTFAGVERRRAERRHRLEPSLRKLGWSVVDTDEL
Ga0307498_102127551	3300031170	Soil	MLIFVVTRSRLDRYEELRHDFGDWRDVRIILDRREGDRREPDDTFAGIERRGAERRRRRPDLRKLGWSLVDTD
Ga0307499_101994851	3300031184	Soil	MLIFVVARTRLDRYEELHRQFGDRRDVRIVLDRREGDRRTPPQHAFAGADRRQLERRQWLPDLRKLGWFVVDPEELAS
(restricted) Ga0255312_10834022	3300031248	Sandy Soil	VLIFVVARSRLDRYEELCQQFGDRRDVRIVLDRREGDRRTPQHTFAGADRRRLERREWLPDLRKLGWSVVDTDELGS
Ga0310886_104820781	3300031562	Soil	VLIFVVSRTRLDRYEELRRHFEDWRDVRIVLDRREGDRRAPYAGFSGADRRQVERRQPLPGLRTIGWAVVESE
Ga0307469_100431132	3300031720	Hardwood Forest Soil	VLIFVVGRSRLDRYEELRLHFEDWRDVRVVLDRREGERREPHDTCVGVERRRAERRHRLEPSLRRLGWAVVDTDELVS
Ga0307468_1000075395	3300031740	Hardwood Forest Soil	LDVLLFVVARTRLDRYEELRREFEDWHDVRIILDRREGERRKPHDLPAGVEKRRADRRHQQPDLRKLGWSVVDADESGSGIH
Ga0307468_1006777191	3300031740	Hardwood Forest Soil	VLIFVVGRSRLDRYEELRLHFEDWRDVRVVLDRREGERREPHDTCVGVERRRAERRHRLELGWAVVDTDELVS
Ga0307473_103240551	3300031820	Hardwood Forest Soil	VLIFVVARSRLDRYEELRRHFEDWRDVRIVLDRREGERRALHGQFGGVDRRRVERRQPLPGLRT
Ga0307473_107394302	3300031820	Hardwood Forest Soil	LLLFIVARTRLDRFEELRQYFAGWRDVRIVLDRREGERREPHDTCAGVERRRAERRHRLEPSLKKLGWVVVDTNELVS
Ga0310892_102128002	3300031858	Soil	VLIFVVSRTRLDRYEELRRHFEDWRDVRIVLDRREGDRRAPYAGFSGADRRRVERRQPLPGLRTIGWAVVESE
Ga0310885_102131862	3300031943	Soil	VLIFVVSRTRLDRYEELRRHFEDWRDVRIVLDRREGDRRAPYAGFSGADRRRVERRQPLPGLRTIGLAVVESE
Ga0310884_100601662	3300031944	Soil	VLIFVVSRTRLDRYEELRRHFEDWRDVRIVLDRREGDRRAPYAGFNGADRRRVERRQPLPGLRTIGWAVVESE
Ga0307470_113899532	3300032174	Hardwood Forest Soil	VLIFVVSRTRLDRYEELRRHFEDWRDVRIVLDRREGDRRVPYGAFTGTDRRRVERRQPLPGLRTIGWAVVESE
Ga0307471_1011149972	3300032180	Hardwood Forest Soil	LLLFIVARTRLDRFEELCQYFAGWRDVRIALDRREGERREPPDTCVGVERRRAERRRRLEPSLKKLGWAVVDTNELVS
Ga0307471_1014835801	3300032180	Hardwood Forest Soil	WSVGVLIFVVARTRLDRYEELRQKFGGSSDVRVVLERREGDRRTSDRPFWGVDRRRVERRHRLNVAQQLSKLGWSVVDTDELVS
Ga0307471_1032742471	3300032180	Hardwood Forest Soil	LLLFLVARTRLDRFEELRQYFAGWRDVRIVLDRREGERREPHDTCVGVERRRAERRHRLEPSLKKLGWAVVDTNELVS
Ga0307472_1008501282	3300032205	Hardwood Forest Soil	LLLFIVARTRLDRFEELCQYFAGWSDVRIVLDRREGERREPPDTCVGVERRRAERRRRLEPSLKKLGWAVVDTNELVS
Ga0364924_001333_2490_2768	3300033811	Sediment	MRFRDLDGSGSGDIDVLIFVVACTRLDRYEELLWQFGGWSDVRVVLDRRGGERREPHDAFAGVERRRVERRHRLEPSLRKLGWAVVDTDELI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters