Scaffold Ga0314862_0131243

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0314862_0131243

Scaffold Ga0314862_0131243

Overview

Basic Information
Taxon OID	3300033803 Open in IMG/M
Scaffold ID	Ga0314862_0131243 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	598
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-6.3272	Long. (^o)	-74.8136	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003586	Metagenome / Metatranscriptome	478	Y
F011812	Metagenome / Metatranscriptome	287	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314862_0131243_178_312	F011812	GGA	VPEHLIERAEVIALLFNVSDIAVTLTEIERHLGGDDGEEEADEG
Ga0314862_0131243_284_442	F003586	GGAGG	MARKKLTKAERAERDSRHERVLANARRTRELAEQAQAKLDAESAGRDGSSTD

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