NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326759_00135

Scaffold Ga0326759_00135


Overview

Basic Information
Taxon OID3300033781 Open in IMG/M
Scaffold IDGa0326759_00135 Open in IMG/M
Source Dataset NameHot spring water microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.JH_P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17747
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (90.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.6903Long. (o)-110.7293Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013613Metagenome / Metatranscriptome269Y
F028973Metagenome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0326759_00135_11777_12103F028973GAGMGMAQVTEEEEKRAQETVDEIIRRLEEYHVNGNWDEFFDNDVLDVLLLTTPDKEDVLGFSILLSYGGPNVEFLCDRGDGKIIYSYGDVEVKKDVDPDICDDVINYLDS
Ga0326759_00135_17269_17745F013613GGAGGMPRPRKFPDGGVVISTYVPYELYEKVKELARSKGKNISEIAYELIKRGLEASDASAADPPDPPEDALHVALKGLEPLERERVLQFIKGLEDAEAKLAKLGPNVRQARAGRPTLLDVVNQQEVTKLKGTVVDLKRTYERSIKRIVRDPAALNMIGERLLR
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