3300033781: Hot spring water microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.JH_P

Overview

Basic Information

• IMG/M Taxon OID: 3300033781
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0136052 | Gp0348979 | Ga0326759
• Sample Name: Hot spring water microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.JH_P
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 41249552
• Sequencing Scaffolds: 10
• Novel Protein Genes: 13
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus → unclassified Acidilobus → Acidilobus sp.	1
All Organisms → cellular organisms → Archaea → TACK group	1
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.6903
  • Long. (^o): -110.7293
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008606	Metagenome / Metatranscriptome	330	Y
F013613	Metagenome / Metatranscriptome	269	Y
F024139	Metagenome / Metatranscriptome	207	Y
F028973	Metagenome	190	Y
F035135	Metagenome / Metatranscriptome	173	Y
F036493	Metagenome	170	N
F039967	Metagenome	162	N
F049309	Metagenome / Metatranscriptome	147	N
F083831	Metagenome / Metatranscriptome	112	Y
F085903	Metagenome	111	Y
F102130	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0326759_00126	Not Available	18763
Ga0326759_00128	All Organisms → cellular organisms → Archaea	18349
Ga0326759_00135	Not Available	17747
Ga0326759_01695	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus → unclassified Acidilobus → Acidilobus sp.	2772
Ga0326759_01896	All Organisms → cellular organisms → Archaea → TACK group	2577
Ga0326759_02285	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	2256
Ga0326759_05006	Not Available	1308
Ga0326759_05971	All Organisms → Viruses → Predicted Viral	1150
Ga0326759_06346	Not Available	1101
Ga0326759_08078	Not Available	926

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0326759_00126	Ga0326759_00126_6452_6715	F039967	MIASIGVGVGLVAPYGAIENVTVPEGLKSSQDIMASAVTVLLGLTVFGTSVRNMLQPPYGGTWTWLNTSTSVYMSVGAFITIRDKAD
Ga0326759_00128	Ga0326759_00128_4073_4339	F008606	VAEARDPEDPDSRSYDKLVELSEQVNELRGQVVSLAERVTRLEEENRWLRQELAEIKGAVTDIRRNVWMILASTITVLVTVIIGLIVH
Ga0326759_00128	Ga0326759_00128_8332_8595	F039967	MIASIGVGVGLLVPYGAIEKVTVPEGLKLSQDIMASAVTVLLGLTVFGTSVRNMLQPPYGGTWAWLNTSTSLNMSVGAFITIRDKAD
Ga0326759_00135	Ga0326759_00135_11777_12103	F028973	MGMAQVTEEEEKRAQETVDEIIRRLEEYHVNGNWDEFFDNDVLDVLLLTTPDKEDVLGFSILLSYGGPNVEFLCDRGDGKIIYSYGDVEVKKDVDPDICDDVINYLDS
Ga0326759_00135	Ga0326759_00135_17269_17745	F013613	MPRPRKFPDGGVVISTYVPYELYEKVKELARSKGKNISEIAYELIKRGLEASDASAADPPDPPEDALHVALKGLEPLERERVLQFIKGLEDAEAKLAKLGPNVRQARAGRPTLLDVVNQQEVTKLKGTVVDLKRTYERSIKRIVRDPAALNMIGERLLR
Ga0326759_01695	Ga0326759_01695_2102_2374	F036493	VLSSTLVWVLTVAVAVVASVKVRQSSVFNALIAIASTLIWATVAPGVNLHIRYWPTVAFALLVAIFIFEVFAFGLIMLWKEYALKGYQTD
Ga0326759_01896	Ga0326759_01896_1979_2215	F085903	MFKIAFCVLVGVNSLTKAFLTAVVILLVVADSLYETAIGMKTSDYALYLRTHPPSLALFIVLYALVGVFFYIIARWWS
Ga0326759_02285	Ga0326759_02285_3_389	F013613	KGKNISEVAYELIKRGLEANGASAADPPEDALQGALKSLEPLERERVLQFIRELEEAEAELARLGPEAVRQARAMRLTSPELMNLDKKVRLLRHTYEKTIKKSVRSPEVLDVIGERLLRLMKELGIPV
Ga0326759_05006	Ga0326759_05006_99_260	F083831	MYKIEKIEINGNKIYCTIYNKYERFNNIPIEKLIVIRKNGKLYAKLKFDKENG
Ga0326759_05971	Ga0326759_05971_806_1150	F035135	MIVNEKFTTPLQLRRDTLVPCSVYDQQFISSFFFDVIDDKEYEYIMFTFLMKHAFKIYLNVWRQQREFINYLKTFKDEFKDAFDYYQRLSVTTQQRIYETTHVIACFFTFDDDVR
Ga0326759_06346	Ga0326759_06346_614_1078	F024139	MAQEVAKKKAKKKTLNLKITVYQDPKDNLRFKADIKVNDWTSSFGGWLDRKYIIDYLNMDLQNAWAYLGFVERAKTEESRQSDLNILRLHLEDALAHILAYEIAQDNVVTKEEICNRWWEAVGANECAYIECAGLAKEDLDACMESCKKEMCGS
Ga0326759_08078	Ga0326759_08078_571_924	F049309	AQVFPFSVYKWSPEKNAYRYLTPEDIPKGWRLIPIEGGGLGLCLIDMHVFDLLDEPYFKWELYPWNPPPGGLSEDLYFFRKLIDKGIQPYADLQVTASHYLAPPVALKFDGTLYNTP
Ga0326759_15408	Ga0326759_15408_334_549	F102130	MHVFDLLDEPYFRWELYPWNPPPGGLSEDLYFFKKLIDKGIQPYADLQVTASHYLAPPVALKFDGTLYNTP